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Name : ECH74115_3480 (ECH74115_3480) Accession : YP_002271749.1 Strain : Escherichia coli EC4115 Genome accession: NC_011353 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3220670 - 3223252 bp Length : 2583 bp Strand : - Note : identified by match to protein family HMM PF00577 DNA sequence : ATGTCCGGGAGTTATGTCAATGCCTGGGCTGAAAATGAAATTCAGTTTGATTCCCGTTTTCTGGAGTTAAAAGGCGACAC AAAAATCGATCTGAAGCGATTTTCCAGCCAGGGTTATGTCGAACCTGGGAAATACAATTTACAGGTTCAACTAAATAAAC AGCCGCTGACGGAAGAATACGATATTTACTGGTACGCCTCTGAGAACGATGCCAGTAAAACCTATGCCTGCCTGACGCCT GAACTGGTCGCGCAGTTTGGCTTAAAAGAGGATGTGGCAAAAAACCTGCAATGGATCCACGACGGCAAATGCCTGAAACC CGGTCAACTGGAAGGCATTGATATTAAAGCTGACCTGAGTCAGTCAGCGTTAGTCATTTCATTACCCCAGGCTTACCTTG AATATACCGACATCAACTGGGATCCGCCTTCACGCTGGGATGACGGTATATCTGGTTTAATTGCTGACTACAGTATTACC GCCCAGACACGACATGAAGAAAATGGCGGGGATGACAGCAATGAAATTAGCGGTAACGGGACGGTTGGGGTGAACCTCGG CGCATGGCGTCTTCGTGCCGACTGGCAGACTGATTATTTGCATAGTAAAAGCAATGATGACGATGTTATCAACGGTGATG ACACGCAAAAAAACTGGGAGTGGAGCCGCTACTACGCCTGGCGAGCCTTACCGTCGCTAAAAGCCAAACTTGGCCTTGGC GAAGACTACCTGAATTCTGATATTTTCGACGGCTTTAACTACGTGGGTGGCAGTATCAGCACCGACGATCAAATGTTGCC GCCGAATCTGCGCGGCTATGCGCCGGATATCTCCGGCGTGGCGCACACCACCGCGAAAGTGACCGTCAGCCAGTTGGGCC GCGTCATCTACGAAACCCAGGTCCCGGCGGGGCCGTTCCGCATCCAGGATCTTGGCGATTCGGTCTCCGGTACGCTGCAT ATCCGCATTGAAGAACAGAACGGTCAGGTGCAGGAATATGACATCAACACCGCCTCGATGCCGTTCCTGACTCGCCCCGG CCAGGTGCGCTATAAACTGATGATGGGCCGCCCGCAGGAGTGGGGGCACCACGTGGAAGGCGGTTTCTTCTCCGGCGGCG AAGCTTCCTGGGGGATTGCCAACGGCTGGTCGCTATACGGCGGGGCGCTGGCAGATGAACACTATCAGTCGGCGGCGCTT GGCGTCGGTCGCGACCTGTCTGTGTTTGGTGCGGTGGCCTTTGATATCACCCACTCGCATACCCGTCTGGATAAAGAGAC CGCCTACGGGAAAGGTTCACTGGACGGCAACTCGTTTCGCCTGAGCTATTCCAAAGACTTCGATGAACTGAACAGCCGCG TCACTTTTGCCGGATACCGCTTCTCGGAAGAGAACTTCATGACCATGAGCGAGTATCTCGATGCCAGCGACAGCGAAATG GTGCGCACCGGCAACGACAAAGAGATGTACACCGCCACCTATAACCAGAACTTCAGGGATGCCGGTGTGTCTGTTTATCT CAACTACACCCGCCATACCTACTGGGATCGCGACGAACAGACCAACTACAACGTCATGCTCTCGCACTACTTCAACCTGG GCAGTATCCGCAACATGAGCATTTCCATGACCGGATACCGCTACGAGTATGACAACCAGGCCGATAAAGGTGTGTACATA TCGCTCAGTATGCCGTGGGGTGACAGCAGCACCATCAGCTATAACGGCAACTACGGCAGCGGTTCGGACAGCAGCCAGGT GGGGTATTTCAGCCGTGTCGATGACGCAACCCATTACCAGTTGAACGTAGGCACCAGCGACAATCACTCCAGCGTTGACG GTTATTACAGCCACGACGGATCGCTGGCGCAGGTCGATCTCAGCGCTAACTACCATGAAGGGCAGTACACCTCGGCGGGT ATTTCCTTACAGGGCGGCGCGACGCTCACCGCACAAGGTGGCGCGCTCCACCGTACCCAGAATATGGGCGGTACGCGTCT GCTGATTGATGCCGACGGTGTGGCTGGTGTTCCGGTGGAAGGAAATGGCGCGGCGGTTTACACCAATATGTTCGGTAAGG CAGTGGTGGCAGACGTCAACAACTACTACCGCAACCAGGCGTATATCGACCTAAACAACCTGCCGGAAAACGCCGAAGCC ACCCAGTCCGTGGTGCAGGCCACGCTTACCGAAGGGGCCATTGGCTACCGTAAGTTCTCGGTGATCAGCGGGCAAAAAGC GATGGCGGTGCTGCGTCTGCAAGATGGCAGTTATCCGCCGTTTGGCGCGGAAGTGAAAAACGACAGCGCGCAGAACGTCG GTCTGGTTGACGATGACGGCAACGTCTACCTCGCGGGCGTAAAACCTGGCGAGCATATGATCGTTTCATGGGGCGGTGTG GCCCACTGCGATATTCATCTGCCTGACCCGCTGCCAGCCGATCTGTTCAATGGCCTGTTATTACCATGCCAGCAAACAGG GGCGATATCTCCTTCGATGCCTCATGAAATTAAGCCGGTGATCCAGGAGCAGACCCAGCAGGTGATGCCAACGGAAGCGC CAGTATCGGTATCAGCCAATTAA Protein sequence : MSGSYVNAWAENEIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLTEEYDIYWYASENDASKTYACLTP ELVAQFGLKEDVAKNLQWIHDGKCLKPGQLEGIDIKADLSQSALVISLPQAYLEYTDINWDPPSRWDDGISGLIADYSIT AQTRHEENGGDDSNEISGNGTVGVNLGAWRLRADWQTDYLHSKSNDDDVINGDDTQKNWEWSRYYAWRALPSLKAKLGLG EDYLNSDIFDGFNYVGGSISTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQLGRVIYETQVPAGPFRIQDLGDSVSGTLH IRIEEQNGQVQEYDINTASMPFLTRPGQVRYKLMMGRPQEWGHHVEGGFFSGGEASWGIANGWSLYGGALADEHYQSAAL GVGRDLSVFGAVAFDITHSHTRLDKETAYGKGSLDGNSFRLSYSKDFDELNSRVTFAGYRFSEENFMTMSEYLDASDSEM VRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDRDEQTNYNVMLSHYFNLGSIRNMSISMTGYRYEYDNQADKGVYI SLSMPWGDSSTISYNGNYGSGSDSSQVGYFSRVDDATHYQLNVGTSDNHSSVDGYYSHDGSLAQVDLSANYHEGQYTSAG ISLQGGATLTAQGGALHRTQNMGGTRLLIDADGVAGVPVEGNGAAVYTNMFGKAVVADVNNYYRNQAYIDLNNLPENAEA TQSVVQATLTEGAIGYRKFSVISGQKAMAVLRLQDGSYPPFGAEVKNDSAQNVGLVDDDGNVYLAGVKPGEHMIVSWGGV AHCDIHLPDPLPADLFNGLLLPCQQTGAISPSMPHEIKPVIQEQTQQVMPTEAPVSVSAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 4e-152 | 45 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-150 | 45 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-150 | 45 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 6e-152 | 45 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 7e-152 | 45 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 7e-152 | 45 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 2e-158 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECH74115_3480 | YP_002271749.1 | fimbrial usher protein | VFG1548 | Protein | 2e-152 | 45 |
| ECH74115_3480 | YP_002271749.1 | fimbrial usher protein | VFG0884 | Protein | 3e-152 | 45 |
| ECH74115_3480 | YP_002271749.1 | fimbrial usher protein | VFG0895 | Protein | 3e-152 | 45 |
