Gene Information

Name : ECH74115_1884 (ECH74115_1884)
Accession : YP_002270308.1
Strain : Escherichia coli EC4115
Genome accession: NC_011353
Putative virulence/resistance : Unknown
Product : IS1, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 1780445 - 1780948 bp
Length : 504 bp
Strand : +
Note : identified by match to protein family HMM PF03400

DNA sequence :
ATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGT
AACCTCGCGCATACAACCGGGCAGTGATGTGATTGTCTGCGCTGAAATGGACGAACAGTGGGGCTACGTCGGTGCTAAAT
CACGTCAGCGCTGGCTGTTTTACGCGTATGACAGGATACGGAGGACGGTTGTGGCGCACGTCCTCGGTGAACGCACTCTG
GCCACACTGGAGCGTCTTCTGAGCCTGCTGTCGGCCTTTGAGGTCGTGGTATGGATGACGGATGGCTGGCCGCTGTATGA
ATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGAC
AACACCTGGCAAGGCCGGGACGGAAGTCACTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGGACATCGGGCATTAT
CTGAACATAAAACACTATCAGTAA

Protein sequence :
MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVAHVLGERTL
ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARPGRKSLSFSKSVELHDKDIGHY
LNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 6e-66 99
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 6e-66 99
aec38 AAW51721.1 InsB Not tested AGI-3 Protein 8e-52 99
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 2e-65 98
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 3e-65 98
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 7e-47 96
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 5e-65 96
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 1e-61 92
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 2e-61 89
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 2e-61 89
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 2e-61 89
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 9e-59 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECH74115_1884 YP_002270308.1 IS1, transposase orfB VFG0612 Protein 1e-65 96