Gene Information

Name : ECH74115_0149 (ECH74115_0149)
Accession : YP_002268749.1
Strain : Escherichia coli EC4115
Genome accession: NC_011353
Putative virulence/resistance : Virulence
Product : chaperone protein EcpD
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 159864 - 160589 bp
Length : 726 bp
Strand : -
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGTTTCCCTTGGTTAAAAAAACGGTTAGTGCATTATTTGTGAGTACTCTGTTAGCCAGTGCACCAGCATTCGCTGACAT
TATTATTTCCGGAACACGTATCATTTATAACGCTGATAAAAAAGATGTTAACGTTCGTCTGGAAAATAAAGGGAATCGCC
CCTTACTGATTCAGAACTGGTTGGATACGGGCGATGACAATGCCGATCCCAGCCAGATCAAAGTGCCGTTTACCGCGACC
CCACCAGTTTCACGCGTGGAGCCAAAACGCGGTCAAACCGTAAAAGTGATGTATACCGGTGCAACAGCCCTGCCGAAAGA
CCGTGAAAGCGTCTACTGGTTTAACGTGCTGGAAGTGCCGCCTAAGCCGAAAGATGCTGAGGCTGACAAAAACTTGTTAC
AGCTGGCTTTCCGCACACGCATCAAACTCTTTTATCGCCCGAGTGGGTTACAGGGAGAACCGGCTGAAGCACCGGCGAAA
ATCACCTGGAAATTAAACAACGCTCAGTTACAGGCAAATAACCCAACGCCATATTACGTGTCCTTTAATGAGGTCAAGCT
GGAAAGCGGCGGCAAAACCTACAACGTCAATTCCAGCATGGTCACGCCGTTCAGCCAGGCAAGCTTTGGCGTAACCAGTC
TGCCAGGAAGCGTGTCATCCGGAAAAGTGGTCTTTAAAGCGATCAACGACTTTGGCGGCAACATTGATGGTTCCGCAACA
TTCTAA

Protein sequence : 
MFPLVKKTVSALFVSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNWLDTGDDNADPSQIKVPFTAT
PPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPKPKDAEADKNLLQLAFRTRIKLFYRPSGLQGEPAEAPAK
ITWKLNNAQLQANNPTPYYVSFNEVKLESGGKTYNVNSSMVTPFSQASFGVTSLPGSVSSGKVVFKAINDFGGNIDGSAT
F

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ecpD1 AAO49832.1 pilin chaperone ecpD1 Not tested SPI-3 Protein 9e-68 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECH74115_0149 YP_002268749.1 chaperone protein EcpD VFG0007 Protein 8e-41 42
ECH74115_0149 YP_002268749.1 chaperone protein EcpD VFG1145 Protein 6e-40 41