Gene Information

Name : ECH74115_1379 (ECH74115_1379)
Accession : YP_002269852.1
Strain : Escherichia coli EC4115
Genome accession: NC_011353
Putative virulence/resistance : Unknown
Product : IS629, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1375525 - 1376412 bp
Length : 888 bp
Strand : -
Note : overlaps another CDS with the same product name; identified by match to protein family HMM PF00665

DNA sequence : 
ATGCCGCTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGGTATGCAGTGAACTGCATATTGCCCCGTCAACGTA
TTACCACTGTCAGCAACAGCGACATCATCCTGATAAACGCAGTGCCCGTGCTCAGCGCGATGACTGGCTGAAGAGAGAGA
TACAGCGCGTATACGATGAAAATCATCAGGTGTACGGTGTGCGTAAAGTCTGGCGCCAGTTGTTACGCGAAGGTATCAGG
GTGGCCAGATGTACAGTGGCGCGCCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACTAC
CGTCAGCCGGAAAGCCGTTTCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGTCCTGACCAGCTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATGTATCGTG
GGGTGGCGAGTCTCATCGTCTATGGAAACGACATTCGTGCTGGATGCACTGGAGCAGGCGTTGTGGGCCCGTCGGCCGTC
CGGCACAGTCCATCACAGTGATAAAGGTTCTCAGTATATATCACTGGCCTATACGGAGCGACTAAAAGAAGCAAAACTGC
TGGCATCAACAGGGAGTACAGGTGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTA
ATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACAATCGACG
ATTGCTGGGAAGGCTGGGTCATATCCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCAGAAACGATGATCTGG
CAGCCTGA

Protein sequence : 
MPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKREIQRVYDENHQVYGVRKVWRQLLREGIR
VARCTVARLMAVMGLAGVLRGKKVRTTVSRKAVSAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIV
GWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYISLAYTERLKEAKLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHIPPAEAEKAYYASIRNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-135 99
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-135 99
Z1221 NP_286756.1 transposase Not tested TAI Protein 8e-136 99
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-135 99
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 7e-131 98
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-132 97
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-132 97
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-132 97
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 8e-132 96
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-131 96
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-91 96
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-131 96
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-132 96
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 7e-106 96
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 4e-128 95
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 8e-128 95
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 8e-128 95
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 8e-128 95
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-90 95
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 8e-129 95
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-98 95
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-51 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECH74115_1379 YP_002269852.1 IS629, transposase orfB VFG1602 Protein 4e-129 95