Gene Information

Name : ECH74115_1178 (ECH74115_1178)
Accession : YP_002269673.1
Strain : Escherichia coli EC4115
Genome accession: NC_011353
Putative virulence/resistance : Unknown
Product : IS629, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1190304 - 1191194 bp
Length : 891 bp
Strand : +
Note : overlaps another CDS with the same product name; identified by match to protein family HMM PF00665

DNA sequence : 
ATGATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGGTATGCAGCGAACTGCATATTGCCCCGTCAAC
GTATTACCATTGTCAGCAACAGCGACATCATCCGGATAAACGCAGTGCCCGTGCGCAGCACGACGACTGGCTGAAGAGAG
AGATACAGCGCGTATACGATGAAAATCATCAGGTGTACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGAATC
AGGGTGGCCAGATGTACAGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTAC
GACCATCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGG
TGGCTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTTATCATTGATGTGTTTGCCGGATACATC
GTGGGGTGGCGGGTCTCATCGTCTATGGAAACGACATTCGTGCTGGATGCGCTGGAGCAGGCGTTGTGGGCCCGTCGTCC
GTCTGGCACCATCCATCACAGCGATAAAGGCTCTCAGTATGTGTCACTGGCCTATACGGAGCGACTAAAAGAAGCCGGAT
TACTGGCATCAACAGGGAGTACAGGCGACTCGTATGACAACGCGATGGCTGAGAGCATCAATGGTCTTTACAAAGCGGAG
GTAATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCG
ACGATTGCTGGGAAGGCTGGGCCATACTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATC
TGGCAGCCTGA

Protein sequence : 
MMPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENHQVYGVRKVWRQLLREGI
RVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYI
VGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAE
VIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-137 100
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-137 100
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-134 99
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-94 99
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-108 99
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-134 98
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-134 98
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-134 98
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-130 97
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-135 97
Z1198 NP_286733.1 transposase Not tested TAI Protein 1e-131 97
Z1638 NP_287141.1 transposase Not tested TAI Protein 1e-131 97
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-129 97
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 7e-132 97
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-130 97
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-132 97
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-130 97
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-92 97
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-100 97
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 5e-131 96
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 4e-130 96
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-52 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECH74115_1178 YP_002269673.1 IS629, transposase orfB VFG1602 Protein 3e-131 96