Gene Information

Name : ECH74115_B0041 (ECH74115_B0041)
Accession : YP_002268424.1
Strain :
Genome accession: NC_011350
Putative virulence/resistance : Unknown
Product : IS629, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 16151 - 17038 bp
Length : 888 bp
Strand : -
Note : overlaps another CDS with the same product name; identified by match to protein family HMM PF00665

DNA sequence : 
ATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGGTATGCAGCGAACTGCATATTGCCCCGTCAACGTA
TTACCATTGTCAGCAACAGCGACATCATCCGGATAAACGCAGTGCCCGTGCGCAGCACGACGACTGGCTGAAGAGAGAGA
TACAGCGCGTATACGATGAAAATCATCAGGTGTACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGAATCAGG
GTGGCCAGATGTACAGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGAC
CATCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTTATCATTGATGTGTTTGCCGGATACATCGTG
GGGGGGCGGGTCTCATCGTCTATGGAAACGACATTCGTGCTGGATGCGCTGGAGCAGGCGTTGTGGGCCCGTCGTCCGTC
TGGCACCATCCATCACAGCGATAAAGGCTCTCAGTATGTGTCACTGGCCTATACGGAGCGACTAAAAGAAGCCGGATTAC
TGGCATCAACAGGGAGTACAGGCGACTCGTATGACAACGCGATGGCTGAGAGCATCAATGGTCTTTACAAAGCGGAGGTA
ATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCGACG
ATTGCTGGGAAGGCTGGGCCATACTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATCTGG
CAGCCTGA

Protein sequence : 
MPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENHQVYGVRKVWRQLLREGIR
VARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIV
GGRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 1e-92 99
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-134 99
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-134 99
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-133 98
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-107 98
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-129 97
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 8e-133 97
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-129 97
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 6e-133 97
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-130 97
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-130 97
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 7e-91 97
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-129 97
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-133 97
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-132 97
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 9e-129 96
Z1198 NP_286733.1 transposase Not tested TAI Protein 5e-130 96
Z1638 NP_287141.1 transposase Not tested TAI Protein 5e-130 96
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-128 96
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-128 96
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-97 96
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-49 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECH74115_B0041 YP_002268424.1 IS629, transposase orfB VFG1602 Protein 6e-129 96