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Name : gspF (ECH74115_B0005) Accession : YP_002268500.1 Strain : Genome accession: NC_011350 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 85684 - 86907 bp Length : 1224 bp Strand : + Note : identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 DNA sequence : ATGGCGTTGTTTCATTATCAGGCATCAGATATTCACGGTAGAAAACGCAGTGGCATTCTGGAGGCGGATTCGGCCCGACA TGCCCGTCAGTTGCTGCGTGAGCAGGCGCTTATTCCAGTCAGGTTGGATGAGAAACAGGTCCATCACAAGCACTCACTGC GGAGTATCCTGAGGTTTCGTCCGCGCGGGGGGAGCAGCGCCGAACTCGCGTTACTGACACGGCAGTTAGCCACACTAGTG GCCGCATCTCTGCCGCTTGAAGAGGCGCTGGATGCGTTGTTGAGGCAGAGTGAAAAACCGCGTCAGCGGAACTTAATCGC TGCCGTGCGCACCAAGGTTCTCGAGGGACATTCCTTGGCCGCGGCGATGGGCATGTTTCCAGGTACGTTTGAGCGTCTTT ATTGTGCGATGGTGGCGGCGGGGGAAACATCCGGTCGTTTGGACGTGGTGCTCAGTCGTCTGGCTGACTATACCGAGCAG CGCCAGATCATGCGAAACCGTCTACTCCAGGCATTGCTCTATCCTTGTGTTCTGACGTTGGTGGCGGTTGGGGTTATTGC CATTCTGCTTACTGCGGTTGTGCCGAAAGTGGTTGAGCAGTTTATTCATATGAAACAGACCCTTCCCTTATCTACCCGCG TACTGATGGGGGCTGCTGAGGTGAGCCAGACTTGGGGCCCGTGGCTGTTACTGGCCGCAGCGCTGGGCGGGATAGCGGGG CGCATGATATTACATCAGCCCTCCCAGCGTCTGGCTTTTCATCATCTGCTGTTGCGGCTGCCGGTCGTGGGGCGCATATC GCGCGGTCTGAATACCGCACGTTATGCCCGCACGCTGAGCATTCTTAATGCCAGTGCGGTACCGCTGCTCCAGGCGATGC ACATCAGTGGTGACGTACTGAGTAATGACTGGGCCCGTCATCAGTTAGCTACCGCGGCCGAGTTGGTTAGGGAAGGGGTC AGCCTGCATCAGGCACTGGAGCAGACTTCGCTGTTTCCGCCTATGATGCGGCACATGATTGCCAGCGGTGAAAATAGTGG CGAACTCGACAGCATGTTGGAACGGGCCGCCGACAATCAGGATCGTGAGTTCAGCACACAGATGCAACTGGCGCTGGGAT TGTTTGAACCGCTGTTGGTGGTGGGTATGGCCGGGGTCGTTTTGTTTATTGTTCTGGCAATTCTGCAGCCGCTCCTGCAG CTCAACAACATGATGAATATGTGA Protein sequence : MALFHYQASDIHGRKRSGILEADSARHARQLLREQALIPVRLDEKQVHHKHSLRSILRFRPRGGSSAELALLTRQLATLV AASLPLEEALDALLRQSEKPRQRNLIAAVRTKVLEGHSLAAAMGMFPGTFERLYCAMVAAGETSGRLDVVLSRLADYTEQ RQIMRNRLLQALLYPCVLTLVAVGVIAILLTAVVPKVVEQFIHMKQTLPLSTRVLMGAAEVSQTWGPWLLLAAALGGIAG RMILHQPSQRLAFHHLLLRLPVVGRISRGLNTARYARTLSILNASAVPLLQAMHISGDVLSNDWARHQLATAAELVREGV SLHQALEQTSLFPPMMRHMIASGENSGELDSMLERAADNQDREFSTQMQLALGLFEPLLVVGMAGVVLFIVLAILQPLLQ LNNMMNM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 5e-94 | 56 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-92 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_002268500.1 | general secretion pathway protein F | VFG2049 | Protein | 4e-92 | 55 |
| gspF | YP_002268500.1 | general secretion pathway protein F | VFG0181 | Protein | 2e-82 | 51 |
| gspF | YP_002268500.1 | general secretion pathway protein F | VFG1870 | Protein | 3e-73 | 43 |
