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Name : gspD (ECH74115_B0003) Accession : YP_002268498.1 Strain : Genome accession: NC_011350 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 82210 - 84177 bp Length : 1968 bp Strand : + Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 DNA sequence : TTGTTCAGGAAATGGTTGAATGGGCGTTTGCCGGTACTTGTGTTCACTACAGTAATTTTGGGGGCCATTCCAGGGTGGGG GGCTGAATTTTCGGCCAACTTTAAAGATACGGATATTCAGGAGTTCATAAATACTGTCAGTAAAAATTTACACAAAACGG TAATAATTAATCCTGACGTGCAGGGAACCATCACTGTACGCAGCTACGATATGCTGAACGAGGAACAATATTATCAGTTC TTTCTCAGTGTGCTGGACGTTTATGGTTTTGCTGTGGTCGATATGCACAACGGTATACTGAAAGTAGTGCGCTCAAAAGA TGCCAAAACGTCGGCGGTGCCGGTAGCTAGTGATGTCAGTCCCGGGACTGGTGATGAGGTTGTTACCCGGGTGGTCCCCG TAAGTAACGTGGCAGCCAGAGATCTGGCGCCTTTGCTGCGTCAGCTCAATGATAATGCTGGCGCAGGAAGCGTGGTGCAT TATGAACCTTCTAATGTTTTGTTGATGACCGGACGTGCTGCAGTGATGAAACGGTTGATGGAGATTGTTGAACGTGTGGA TAAGGTGGGTAATCGCAGCGTTGCCACGGTCCCGCTCACCTACGCGTCCGCAACAGACGTAGCCAGACTTGTTACGGAAC TGACTAAAGAAACAGATAAGACAGCTATACCTGCTTGGATGACGGCGAAACTGGTTGCAGACGAGAGGACAAACTCAGTG CTCGTCAGCGGAGAGCCAATCTCCCAACAGCGTATCATCTCCATAATTAAGCAACTGGATCGTCAGGAGGATGTTCAGGG TAATACTAAGGTGATTTACCTGAAATATGCGAAGGCGAAGGATTTAGTGGAAGTCCTGACAGGTATCAGCAGCAGTATTG AAAACGACTCTAAAAAGAGTCCGTCAACGGAAGCCTTGCGCAAAGGAGTGACGATTAAATCCCACGAACAAACCAATGCC CTGATCCTGACGGGGGCCCCTGACGTCATCCGCGACCTTGAAAATGTGATTTCGCAGTTGGATATTCGTCGTCCTCAGGT CCTGGTGGAGGCCATCATTGCTGAAATACAGGATGCTGACGGGCTGAACCTTGGGATCCAGTGGGTGAATAAACATGCCG GTGTGGCGCAGTTCACCAGTACCGGTTTACCTATTACCACGATGGTTCAGACTCGTCAGAACGAAATCTTAGACAGCGAT CAGAGCAATGCCCTGAGCATGTTTAACGGAATTGCAGCGGGGTTTTATCAGGGAAACTGGGCGATGCTGTTGACGGCGCT CTCCACAAGTAGCAAGAATGATATCTTGGCGACCCCCAGTATTGTCACGCTGGACAATATGGAGGCCACTTTCAATGTTG GTCAGGAGGTCCCGGTACTTTCGGGCTCACAGACAACCTCTGGGGACAATATTTTTAACACGGTCGAGCGCAAAACGGTG GGGATCAAACTCAGGGTAAAACCCCAGATCAACGAGGGTGATTCCGTGTTACTGGAGATAGAACAGGAGGTGTCCGGTGT GGCGGACACTGCAGTAGCCACCACTACTGACTTGGGAGCAACCTTCAACACCCGAACAGTGACCAATGCCATGCTGGTCG GGAATGGCGAAACGGTGGTGGTCGGAGGATTACTGGATAAGTCGATCAGGGGGAGTGAGAGTAAAGTGCCACTGCTGGGG GATATCCCGGTACTGGGGCATCTTTTTCGCGCAAAAAGCGAACAGACAGCTAAGCGTAATCTGATGCTGTTCATTCGGCC AACTATTATTCGTGAGCGCGACGGATTTCGTCATGCTTCGGCCGAAAAATACCAGTCGTTTAATCAGGAACAGGTGCAGT CGCGTGGCAAAGAAACAACGGCGCTGACGCTGAATGAGGAACAGCTCAGGCTGTCCCCCGATCAAGACGATACGGCTTTC CGGAAGGTGAAAGCGGCGATTGCTGCGTTTTATGCGCAGGAGATGTAA Protein sequence : MFRKWLNGRLPVLVFTTVILGAIPGWGAEFSANFKDTDIQEFINTVSKNLHKTVIINPDVQGTITVRSYDMLNEEQYYQF FLSVLDVYGFAVVDMHNGILKVVRSKDAKTSAVPVASDVSPGTGDEVVTRVVPVSNVAARDLAPLLRQLNDNAGAGSVVH YEPSNVLLMTGRAAVMKRLMEIVERVDKVGNRSVATVPLTYASATDVARLVTELTKETDKTAIPAWMTAKLVADERTNSV LVSGEPISQQRIISIIKQLDRQEDVQGNTKVIYLKYAKAKDLVEVLTGISSSIENDSKKSPSTEALRKGVTIKSHEQTNA LILTGAPDVIRDLENVISQLDIRRPQVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTRQNEILDSD QSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTV GIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLG DIPVLGHLFRAKSEQTAKRNLMLFIRPTIIRERDGFRHASAEKYQSFNQEQVQSRGKETTALTLNEEQLRLSPDQDDTAF RKVKAAIAAFYAQEM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 3e-126 | 46 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-117 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_002268498.1 | general secretion pathway protein D | VFG2047 | Protein | 1e-114 | 44 |
