Gene Information

Name : cagH (HPG27_499)
Accession : YP_002266127.1
Strain : Helicobacter pylori G27
Genome accession: NC_011333
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein H
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 541113 - 542045 bp
Length : 933 bp
Strand : -
Note : -

DNA sequence : 
ATGACCCAATACAATCAAAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAACCAACAATACAACCAATTGTA
TCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATTAGCAAATTAACAGGGGAATTTAACGCAC
AAGGCAACACGCAAGGCGCGCAAATTGGTGCTGTTAATAGTCAGATTGCAAGCATTTTAGCGAGTAACACCACCCCTAAA
AATCCCAGTGCTATTGAAGCTTATGCGACAAATCAAATCGCTGTTCCTAGCGTGCCAACAACGGTTGAAATGATGAGCGG
TATATTAGGCAATATTACAAGTGCAGCACCAAAATACGCCCTAGCTCTACAAGAGCAACTGCGTTCTCAAGCAAGCAACA
GCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCACTTGTTGGCTCATCAAAAGTGTTTTTT
AGTTGCATGCAAATTTCTATGACGCCCATGAGTGTTTCTATGCCCACTGTTTATGCCAAATACCAAGCGTTAGCCACTAA
TGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAAGTTCTTGCCGTTTATTGCTATG
CTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCAATTTGTTGCAGAACGCTTCT
CAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCTAACATAAGTTCGCTATATAA
TTACAATATAGTAGCGAATAAATCTTTTTTAAAATCGCATTTGACTTATCTTGATTACATCAAAGACAAGCTTAAGGGGC
AAAAAGATAGCTACTTAACAGAAAGGGTGCAGACTAAAATAATCGTGAAGTGA

Protein sequence : 
MTQYNQSIAEAVSMPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQIGAVNSQIASILASNTTPK
NPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFF
SCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNAS
QMILNQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagH AAC44699.1 CagH Virulence cag PAI Protein 3e-140 100
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 2e-139 99
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 3e-138 99
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 2e-139 99
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-138 99
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 2e-138 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 2e-139 99
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-138 99
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 2e-138 99
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-139 99
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 99
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 9e-139 99
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 9e-140 99
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 1e-138 99
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 7e-139 99
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-140 99
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 9e-140 99
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 99
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-137 99
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-139 99
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-138 99
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 4e-138 99
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-138 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagH YP_002266127.1 cag pathogenicity island protein H VFG0300 Protein 8e-139 99