Gene Information

Name : cagN (HPG27_496)
Accession : YP_002266124.1
Strain : Helicobacter pylori G27
Genome accession: NC_011333
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein N
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 538245 - 539165 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGCATCTTCAAAAAATTAGGCTCTGTCGCTCTTTATTCTTTAGTTGTTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTGCCGAGTGAATACAAAGAATTAGTGGCTTTGGGCTTTAAAAAAATCAAAACACTCCATCAAAGACATGACG
ACGAAGAAGTTACAGAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGGCTAAGCACAAAGG
ATTACAAGAATTAAACGAAATTAACGCTAACCCTTTGAATGGCAATCCTAATAGCAATTCTTCCACTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTAAAACCTGCTGCTCCGCTTGTGCCTGAT
GAGTGGAGAACGCCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGACATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATCCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAGACTCGTTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGT
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTGGAGC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAACATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVVYGGLNAINTALLPSEYKELVALGFKKIKTLHQRHDDEEVTEEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNEINANPLNGNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPAAPLVPD
EWRTPEIEIIINECIISSNDYDGLRKCLIKDIKDQKILAPLLEKIQEIETENNKFSRQHLSGLRLVLNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGATDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-114 100
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 5e-113 97
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 6e-110 97
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 9e-111 97
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 4e-112 97
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 9e-112 97
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-109 96
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 1e-111 96
cagN AAF80207.2 CagN Virulence cag PAI Protein 3e-112 96
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-110 96
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-109 96
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-109 96
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-111 96
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-109 96
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-110 96
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-111 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-109 96
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-111 95
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-109 95
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-111 95
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-109 95
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-109 95
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-111 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 4e-108 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagN YP_002266124.1 cag pathogenicity island protein N VFG0297 Protein 2e-113 97