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Name : HPG27_1403 (HPG27_1403) Accession : YP_002267014.1 Strain : Helicobacter pylori G27 Genome accession: NC_011333 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 1517779 - 1519026 bp Length : 1248 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATTGATAGAAAACTTTTATTGCAAGATTTTGACAAGGTGGCTCTTTCTTTAAAAAAGCGTAACCATGCGATGGATGA TGAATTAGAGCGTTTGTGCGAAGTTATCGTGCATTATAAAAAGCAGCTCATTGAATTAGAAGGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGCATCAAAATGGCTCAAAAAGCGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAATTGAATGAGCTTTCCAAAAGCGTGGGCGAATTGGAGCAACAAATTGATTTAAAGCTTTCCATAATCCCTAA TCTAGTGGATGAAAAAACCCCTTTAGGCGCAAATGAAGAAGACAACATAGAAATTAAAAAAATCTTAACCCCAAGGGTTT TTACTTTCAAACCCAAAGAGCATTTTGAGCTCGCTCAACAAAACGGCTGGATTGATTTTGAAGGCGGCGTGAAACTCGCC AAAAGCCGTTTTTCGGTCATTAGGGGTTTTGGGGCTAAAATTTATCGCGCGCTCATTCATTTAATGCTGGATTTTAATGA AAAAAATGGCTTTGAAATCATCTACACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGATATTTTCAAAATAGAAAATGAAAATTTGTATCTGATCCCCACCGCTGAGGTAACGCTCACCAATCTATAC AACGACACCATTATTAGCGTTGAAAACCTCCCCATTAAAATGACTGCGCACACGCCTTGTTTCAGGAGCGAAGCGGGGAG CGCGGGCAAGGACACAAGGGGGATGATAAGACAGCACCAATTTGATAAAGTAGAATTAGTGGCTATCACGCACCCTAAAG AAAGCGATGTTATGCAAGAGCATATGCTAGAGAGCGCGAGCGAGATCTTAAAGGCTTTGGAATTACCGCACCGGTTCGTG CAATTGTGCAGTGCGGATTTAGGCTTTAGCGCAAGCAACACGATAGATATTGAAGTGTGGCTGCCCGGGCAAAATTGCTA CAGAGAAATCAGCTCGGTGTCTAACACGAGGGATTTTCAAGCCAGGCGCGCTAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAATTAGCGCACACCCTGAATGGCTCTTCTTTAGCGGTAGGCAGAACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATCCACATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDRKLLLQDFDKVALSLKKRNHAMDDELERLCEVIVHYKKQLIELEGLQAFQNKVSKEFGIKMAQKADTSDLKKELENN KIKLNELSKSVGELEQQIDLKLSIIPNLVDEKTPLGANEEDNIEIKKILTPRVFTFKPKEHFELAQQNGWIDFEGGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDIFKIENENLYLIPTAEVTLTNLY NDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDVMQEHMLESASEILKALELPHRFV QLCSADLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-76 | 46 |
