|
Name : rplS (HPG27_1091) Accession : YP_002266708.1 Strain : Helicobacter pylori G27 Genome accession: NC_011333 Putative virulence/resistance : Unknown Product : 50S ribosomal protein L19 Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0335 EC number : - Position : 1196159 - 1196515 bp Length : 357 bp Strand : - Note : this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site DNA sequence : ATGAAAAACCGCTATATTCAGCAGTTTGAAGACACTCAATTAAAAGACAAGACCATGCCAGCATTTAAGGCCGGCGATAC TTTGAGATTGGGTATTACCATTAAAGAAGGCGAAAAAACACGAACTCAGTATTTTGAAGGCGTGTGCATTGCGATTAGAG GCAATGGCGTGGATAAGACTTTTTGCGTGCGTAAAATAGGGGCTAACAATATCGGCGTGGAGAAAATTTTCCCTTTTTAT AGCGAAAGTTTGGCGAGCGTTGAGGTGTTGCGTGTGGGCAGGGTGCGCCGTGCGAAGCTCTACTACTTGCGCGATAGGAG AGGTAAGGCAGCAAGGATTAAAGAAGTCCGCCATTAA Protein sequence : MKNRYIQQFEDTQLKDKTMPAFKAGDTLRLGITIKEGEKTRTQYFEGVCIAIRGNGVDKTFCVRKIGANNIGVEKIFPFY SESLASVEVLRVGRVRRAKLYYLRDRRGKAARIKEVRH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rplS | CAA68924.1 | ribosomal protein L19 | Not tested | Internalin | Protein | 4e-24 | 52 |
| rplS | AAS66827.1 | 50S ribosomal subunit protein | Not tested | SSR-1 | Protein | 4e-21 | 50 |
