Gene Information

Name : intIA (VSAL_II0534)
Accession : YP_002264861.1
Strain :
Genome accession: NC_011313
Putative virulence/resistance : Unknown
Product : site-specific recombinase IntIA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 593499 - 594482 bp
Length : 984 bp
Strand : -
Note : -

DNA sequence : 
ATGGACATTCCATTAAACCTCAATCCCACCTCACAACGCTTTATTGATCAACTTCGTATTTTCATTCGCACTCGTGGTTT
AGCTTACAATACAGAAAAGCACTATATTTATTGGATAAGTAGTTTTATTCGCTTTAAAAACTACACCTCTAAAGAAGAAA
TTGAAGCCTTTGACATCCCAAGTTACCTTGAGCATCTCGTCATAAAACAAAACGTATCGCCTAATACACAGAAAACGGCC
CTTAATGCGCTTGTCTTTTTATGTCGAGAATTTTTACAACAATCCGTTGATAGTTTAGATTTTAAACGCTCAAAAAAGGC
CACAAAACTGCCAACCGTATTTACGCATAAAGAAGCCATGGATGTTATTCACAATCTAAATCACCCAATTAAGCTCATTG
CACAACTGATGTATGGCAGTGGATTGAGGATCAATGAAGCGCTTCGACTTCGAGTTAATGATATTGACCTAGATAAAAAG
ATAATCACGATTAAAAGCGGCAAAGGGAATAAAGATCGCACCTCAATATTGCCTGAAAGTGTTGTCGACGCGATAAAAAC
ACAACTTGCGTTTGTTAAACAACAGCATAAACTCGATGCGATAAACGGTAATGATGAAGTCTATATGTCCTACGCTTTGG
CTGAAAAATACCCAACGCAAGCAAAAAGTTATGGTTGGCAATATGTCTTCCCATCCCCACAAATCAGTAAAGACCCACGA
TCAGAGAAACATCGTAGACATCATTTGTTGGATAGAACAATTCAATCCGCAGTAAAAAAATCCATACTAAAAGTCGGCAT
TGATAAAAAAGCAAGTTGTCACACATTTAGACACAGCTTTGCAACGCGAGTATTAGAAAGAGGGGCAGATTTAAGAACAA
TACAAGAACTTCTAGGTCATTCTGATATTAAGACGACTCAGATCTACACACATGTAATCGGTTTGCATTTTTCAGGAACT
AAGAGTCCGTTAGATTTTGATTAA

Protein sequence : 
MDIPLNLNPTSQRFIDQLRIFIRTRGLAYNTEKHYIYWISSFIRFKNYTSKEEIEAFDIPSYLEHLVIKQNVSPNTQKTA
LNALVFLCREFLQQSVDSLDFKRSKKATKLPTVFTHKEAMDVIHNLNHPIKLIAQLMYGSGLRINEALRLRVNDIDLDKK
IITIKSGKGNKDRTSILPESVVDAIKTQLAFVKQQHKLDAINGNDEVYMSYALAEKYPTQAKSYGWQYVFPSPQISKDPR
SEKHRRHHLLDRTIQSAVKKSILKVGIDKKASCHTFRHSFATRVLERGADLRTIQELLGHSDIKTTQIYTHVIGLHFSGT
KSPLDFD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 1e-39 43
intI1 AAK02045.1 integrase Not tested SGI1 Protein 2e-49 41
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 4e-49 41
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-49 41
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 2e-49 41
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 4e-49 41
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-49 41
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 2e-49 41
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 4e-49 41
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 4e-49 41
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 2e-49 41
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 4e-49 41
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 2e-49 41
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 4e-49 41
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 4e-49 41
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 2e-49 41
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 4e-49 41
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 4e-49 41
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 2e-49 41
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 3e-49 41
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 4e-49 41
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-49 41
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 3e-49 41
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 4e-49 41
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-49 41
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 2e-49 41
int1 YP_005160012.1 integrase Not tested Not named Protein 8e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intIA YP_002264861.1 site-specific recombinase IntIA VFG1028 Protein 2e-49 41