Gene Information

Name : VSAL_II0197 (VSAL_II0197)
Accession : YP_002264552.1
Strain :
Genome accession: NC_011313
Putative virulence/resistance : Virulence
Product : transcriptional activator protein, response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 221796 - 222479 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACTACTTATAATAGAAGATGAAACGAAAGCTGGAGATTATCTAAAAAAGGGATTAACAGAGTCCGGTTACACTGT
TGATCTGTCGCGTGATGGCGTTGATGGTTTGTATAACGCAACGACATATCAATACGATTTAATTATCTTAGATGTCATGC
TGCCAAAATTGAATGGGTGGCAAATTTTGCAAACGCTCAGAAACTGCGAAAATAGCACGCCTATTATTATGCTGACGGCA
AAAGATCAAGTAGATGATAGAGTAAAAGGGTTTGAACTCGGCGCGAATGATTACCTAATCAAGCCCTTTGCCTTTGCTGA
ATTAAAAGCTCGTATTGAAAATGCACTGAGATCTCAAACTGCAAACTCGCACACCCAAAAAGTAAACGAGTTAGTCTTGT
GTGATTTACAACTCGACCTTTTAAAACACACTGCGACAAGAAATCACGATAATATTACGCTAACAGCAAAAGAATTTTCA
TTACTCGAATTGTTCATGCGAAAGCAAGGAGAAGTGCTATCAAGAACCACCATCGCTTCTCTCATTTGGGATATGAATTT
CGACAGTGACACCAATGTCATTGACGTTGCCGTTAAGCGACTCAGAGCAAAAATCGATAAACCTTACGACACGCCATTGA
TTCACACGGTGCGAGGAATGGGTTATAAAATGGACGAGGTGTGA

Protein sequence : 
MKLLIIEDETKAGDYLKKGLTESGYTVDLSRDGVDGLYNATTYQYDLIILDVMLPKLNGWQILQTLRNCENSTPIIMLTA
KDQVDDRVKGFELGANDYLIKPFAFAELKARIENALRSQTANSHTQKVNELVLCDLQLDLLKHTATRNHDNITLTAKEFS
LLELFMRKQGEVLSRTTIASLIWDMNFDSDTNVIDVAVKRLRAKIDKPYDTPLIHTVRGMGYKMDEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-52 51
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-51 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator BAC0083 Protein 3e-55 57
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator BAC0111 Protein 5e-59 57
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator BAC0197 Protein 8e-59 56
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator BAC0125 Protein 2e-57 55
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator BAC0308 Protein 2e-56 55
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator BAC0638 Protein 2e-49 55
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator BAC0347 Protein 2e-52 52
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator NC_010079.5776364.p0 Protein 8e-30 41
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator NC_002952.2859858.p0 Protein 8e-30 41
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator NC_007622.3794948.p0 Protein 8e-30 41
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator NC_003923.1003417.p0 Protein 8e-30 41
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator NC_013450.8614146.p0 Protein 8e-30 41
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator NC_002951.3238224.p0 Protein 8e-30 41
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator NC_007793.3914065.p0 Protein 8e-30 41
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator NC_002758.1121390.p0 Protein 8e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VSAL_II0197 YP_002264552.1 transcriptional activator protein, response regulator VFG0596 Protein 1e-52 51