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Name : VSAL_I3033 (VSAL_I3033) Accession : YP_002264354.1 Strain : Genome accession: NC_011312 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein, epimerase/dehydratase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3282949 - 3284883 bp Length : 1935 bp Strand : + Note : Similar to Vibrio cholerae o139 epimerase/dehydratase UniProt:Q56627 (646 aa) fasta scores: E()=6.8e-152, 70.671% id in 641 aa DNA sequence : ATGCTTAATTTAAACGTCATTTGGTCTCTATCTCGCTATAAAAAACGCCTTATCAGCTTAATTATTGATTTATTTTTTAT TGCTCTCTCTTTTCTTGGTGCTTATTGGGTTCGTATTGGACAAGTTAAGGCTTTGCCTTCAGTAGAAGGTCAGTATGTTT TAGTTAGTACCGTTATTATTACCTTACTGATTTTTACAAAGTTAGGCCTATATCGAGCAGTATTAAGATACTTAGGTTTA CATGTATTGGCTTTAGTCGGGTTAGGTACGGTGTTATCTGCGATTGCGATGGCTGGCTTAGCATTTTTGTTTGATGCAGA CATTCCTCGCTCTGTTCCTATTATCTATGGATCTTTTTTAGCGATTAGTGTTGGCGGTAGCCGCCTTATTATTCGTAGCT TAGTTGCACAATCATCAAATAAATCGGGTAATCCAGTATTAATTTATGGAGCGGGCAGTGCTGGTCGTCAGCTAGCGTTA GCACTACGTCAATCAAGAACGCATAAAGTCGTGGGTTTTGTTGATGAAGACCCTACCTTACAAAATACCATGATGATGGG TTTGTATGTGTATACCGCGGCTTGTGCAGAAAAAATAATAATCAACCATGGCGTAAAACAAATACTACTAGCGATACCAA GTGCGTCTCGTCGCCGTCGTAAAAAAGTGTTAGATACCATTTCATTATTGCCTGTTGAGATACGGACTGTTCCTGATATG TCAGATATCGTTGCAGGCAACGCGAGTATTGATGAGCTTAAAGATGTCTCTATTGATGATCTGTTAGGTCGAGATCCCGT TGCGCCACAGCAAGCTTTAATGGAGGCTAACATCAAAGATAAAGTCGTTATGGTCACTGGTGCGGGTGGTTCTATTGGCT CTGAATTGTGCCGCCAGATTGTTCGTAATAAACCTAAAGCGTTGGTGTTATTTGAGTTATCTGAATTCGCGTTGTATCAA ATTGATAGAGAGCTATCTTTGCTTGTTGAGGCTGAAGGCTTAGGTATTCAAATTATTCCACTGTTAGGTTCGGTTCAACG TATTAACCGCTTATCTAAAGTGATGGGAAGCTTTAAAGTTCAAACGGTATATCACGCAGCCGCTTATAAACACGTACCAT TAGTTGAGTACAATGTCGTTGAAGGGGTTCGTAATAACGTCTTTGGTACTAACTACACAGCTCGTGCTGCGATTGAAGCA AAAGTAGAATCGTTTGTTTTAATCTCTACTGATAAAGCGGTTCGCCCTACCAATATAATGGGCACAACTAAGCGTATGGC TGAGTTAGGTCTGCAAGCGTTGGCAGAGCAGCAAAACAAGATCCGTGCAAAAGATGCAACAGCAGGGACTCGTTTTTGTA TGGTGCGTTTTGGTAATGTATTAGGGTCGTCGGGTTCTGTTGTACCCGTATTTAAGCGTCAAATTGAAAACCGTGAACCT ATTACCGTTACTCATGAAGAGATCACTCGTTTCTTTATGACGATTCCTGAAGCCGCGCAATTAGTGATTCAAGCGGGGGC GATGGGTAAGGGGGGTGATGTGTTTGTTCTTGATATGGGAGAGTCAGTCAAAATAGTTGATTTGGCAAAAAACTTAATTC GTCTTTCTGGTTTAGAAGTGAAAGATGAATCAAATCCATATGGTGATATTGAGATTCACTACACGGGCTTACGTCCAGGT GAAAAACTGTATGAAGAATTGCTAATCGGTGACAATGTTGGTTCAACGGCCCATGAACGTATCATGACGGCACAAGAAGA TTTTTTACCATTAGATGAATACAATGCGTTGTTAGATAAATTAGATACCGTTTGTCATAATTTTGACCATGAAGGGATAC GTCAGTTGCTTCTTGATGCGCCGACTGGGTTTAATCCGGTTGATGGAATAGGGGATTTGGTTTGGAAGGCTGAAGAGCAG GACGCTTTGCTTTGA Protein sequence : MLNLNVIWSLSRYKKRLISLIIDLFFIALSFLGAYWVRIGQVKALPSVEGQYVLVSTVIITLLIFTKLGLYRAVLRYLGL HVLALVGLGTVLSAIAMAGLAFLFDADIPRSVPIIYGSFLAISVGGSRLIIRSLVAQSSNKSGNPVLIYGAGSAGRQLAL ALRQSRTHKVVGFVDEDPTLQNTMMMGLYVYTAACAEKIIINHGVKQILLAIPSASRRRRKKVLDTISLLPVEIRTVPDM SDIVAGNASIDELKDVSIDDLLGRDPVAPQQALMEANIKDKVVMVTGAGGSIGSELCRQIVRNKPKALVLFELSEFALYQ IDRELSLLVEAEGLGIQIIPLLGSVQRINRLSKVMGSFKVQTVYHAAAYKHVPLVEYNVVEGVRNNVFGTNYTARAAIEA KVESFVLISTDKAVRPTNIMGTTKRMAELGLQALAEQQNKIRAKDATAGTRFCMVRFGNVLGSSGSVVPVFKRQIENREP ITVTHEEITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKIVDLAKNLIRLSGLEVKDESNPYGDIEIHYTGLRPG EKLYEELLIGDNVGSTAHERIMTAQEDFLPLDEYNALLDKLDTVCHNFDHEGIRQLLLDAPTGFNPVDGIGDLVWKAEEQ DALL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-81 | 46 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-78 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VSAL_I3033 | YP_002264354.1 | polysaccharide biosynthesis protein, epimerase/dehydratase | VFG0029 | Protein | 9e-114 | 48 |
