Gene Information

Name : varA (VSAL_I2141)
Accession : YP_002263511.1
Strain :
Genome accession: NC_011312
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 2296671 - 2297315 bp
Length : 645 bp
Strand : -
Note : in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate v

DNA sequence : 
GTGATTAAAGTATTCCTTGTAGATGATCATGAGCTGGTTCGCACAGGGATTCGACGTATTCTTGAAGACGTCCGTGGAAT
TAAAGTAGTAGGGGAAGCTGACAGCGGTGAAGATGCCGTTAAATGGTGTCGAACAGAGCAGGCTGATATTGTTCTGATGG
ATATGAACATGCCTGGTATTGGTGGCTTAGAAGCCACGAAAAAGATTTTACGATTTAACCCAGATATGAAAGTTATAGTA
TTAACTATTCATACTGAGAATCCATTCCCAACGAAGGTGATGCAAGCGGGAGCTGCAGGCTATCTAACCAAAGGTGCGGG
ACCGGATGAAATGGTGAATGCTATTCGTATGGTACAAAGTGGCCAGCGTTACTTATCACCAGAAATTGCTCAACAAATGG
CGTTAAGTCAATTTACGCCTGATTCTGAAAATCCTTTTAAAGAACTTTCAGAGCGTGAGTTACAGATAATGATCATGATT
ACTAAAGGCGAAAAAGTGACGGATATTTCCGAACAACTTAATTTAAGCCCTAAAACTGTGAACAGTTATCGTTATCGATT
ATTCAGTAAATTAGACATTAGTGGAGATGTTGAATTAACGCATTTAGCTATTCGTCATGGCATATTAGATGCTGAGACGC
TGTAG

Protein sequence : 
MIKVFLVDDHELVRTGIRRILEDVRGIKVVGEADSGEDAVKWCRTEQADIVLMDMNMPGIGGLEATKKILRFNPDMKVIV
LTIHTENPFPTKVMQAGAAGYLTKGAGPDEMVNAIRMVQSGQRYLSPEIAQQMALSQFTPDSENPFKELSERELQIMIMI
TKGEKVTDISEQLNLSPKTVNSYRYRLFSKLDISGDVELTHLAIRHGILDAETL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 3e-50 49
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 3e-50 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
varA YP_002263511.1 response regulator VFG1889 Protein 2e-55 53