Gene Information

Name : ribD (VSAL_I0922)
Accession : YP_002262419.1
Strain :
Genome accession: NC_011312
Putative virulence/resistance : Unknown
Product : pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD)
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0117
EC number : 3.5.4.26
Position : 1020632 - 1021753 bp
Length : 1122 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATTTACTCCTCAAGATCACTTGATGATGCAGCGCGCTATTCAATTAGCTAAACGTGGTATTTATACGACGGCACC
GAATCCAAATGTGGGCTGCGTACTCGTTAAAAATGGTCTTATTGTTGGTGAAGGGGCACACCTTAAAGCGGGTGAGCCTC
ATGCTGAAGTTCATGCTTTACGCCAAGCAAGTGAGAATGCGAAGGGGGCAACGGCTTACGTTACTTTAGAACCGTGTTCT
CATTATGGTCGAACCCCACCTTGTGCTGAGGGGCTAATAAAAGCAGGCGTAGTAAAAGTTATTTGTGCCATGGTTGATCC
AAACCCACAAGTAGCGGGTCGAGGTTTAGCGATGCTAGAAGCCGCAGGAATAGAGACAGCGTCGGGCTTATTAGAAACGG
AGTCTCGTGCACTGAATCCTTCATTTTTAACTCGAATGGAAACGGGTAAACCGTTTGTTCAATTAAAAATGGCGGCCAGC
TTAGATGGTAAAACAGCGCTGAAAAATGGTGTAAGTCAATGGATCACATCAAAAGAAGCACGACAAGATGTACAGCGTTA
TCGTGCACAAGCCGGAGTGATTCTATCGACGGCAAAAACGGTCATTGAGGATAATGCCTCCCTTAATGTTCGTTGGAGTG
ATTTACCTAATTCAATTCAAGAATCGTATTTAGAAGCAGAGGTAAGGCAGCCATTACGTGTCATTTTAGATCGTCAACAT
CAACTTACTTCTGAACTTGCTCTGTTTAACACTACTGGGAACGTGGTTACCGTTTCTCACCAACCTTCACATCCTCTTAG
CCATCCAGAAAGCCACTTGTATTGTGATCTTGATAATAATAAACAATTAGTATTGTCTGATGTAATACAAAAAATAGCCC
AAGAACATAATGTAAACCATCTTTGGGTTGAAGCTGGTGCAACACTTGCTGCAAGTATGATTTGCGAAGGTCTGGTCGAT
GAACTTATTATCTATTTAGCGCCAAAGTTAATGGGTGCAGATGGCCGAAGTATAGTGAACCTCATCGGATTAGAAGCGAT
GTCTGAAGCAATTAATTTAGACATTAGTGATATTCGAATGGTCGGCAAAGATATTCGAATTACAGCAACAATAGTAAGGT
AA

Protein sequence : 
MKFTPQDHLMMQRAIQLAKRGIYTTAPNPNVGCVLVKNGLIVGEGAHLKAGEPHAEVHALRQASENAKGATAYVTLEPCS
HYGRTPPCAEGLIKAGVVKVICAMVDPNPQVAGRGLAMLEAAGIETASGLLETESRALNPSFLTRMETGKPFVQLKMAAS
LDGKTALKNGVSQWITSKEARQDVQRYRAQAGVILSTAKTVIEDNASLNVRWSDLPNSIQESYLEAEVRQPLRVILDRQH
QLTSELALFNTTGNVVTVSHQPSHPLSHPESHLYCDLDNNKQLVLSDVIQKIAQEHNVNHLWVEAGATLAASMICEGLVD
ELIIYLAPKLMGADGRSIVNLIGLEAMSEAINLDISDIRMVGKDIRITATIVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 6e-64 46
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 6e-64 46