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Name : lysS (THEYE_A1233) Accession : YP_002249051.1 Strain : Thermodesulfovibrio yellowstonii DSM 11347 Genome accession: NC_011296 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1199985 - 1201469 bp Length : 1485 bp Strand : - Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGCAGGAAACGCCGCTTTCAGAGTTGATTCAACAGAGGATTAAAAAACTTACCGCATTAAGAAGTCTTGGTATAGAGCC TTATAATGGAACATTTGAACCTTCAGATAGCACTGAAGATATTTTTAAAAAATTTGGAGAATTTGAGAAAGAACATTTAG AAAATGAAAATATAACCATATCAGTTGCTGGAAGAGTAATTCTGTTAAGAGATTTTGGTAAAGCAGCTTTTGCTCATGTT CAGGATTCAAAGGGGAAAATTCAGATTTATTTAAGAAAAGATATATTAGGAGAAAAGTTTTCATTAATTAAAAATCTTGA TATTGGAGATATTGTAGGAGTTGAAGGAAGGCTTTTTAGAACAAAAACTAATGAATTAACCATAGAAGTTCATAATTTTG TATTTTTAAGCAAGTCTTTGAGACCTCTTCCAGAAAAATGGCATGGTCTTAAAGATATTGAGGCACGGTACAGGCAAAGA TATGTTGACCTTATTGTAAATCCATCAGTAAAAGAAACATTTGTAAAGAGACAGCTAATTATAAAGTATTTAAGAGAGTT CCTTGAAAATGAGGGTTTTCTTGAGGTTGAAACTCCTATGATGCATACAATAGCTGGTGGAGCAAGAGCAAAGCCTTTTA AAACATATCATGAAGCTCTTGATATGGAGCTTTATTTAAGAATCGCTCCTGAACTTTATTTGAAGAGACTCTTGGTTGGA GGCTTTGAAAGAGTTTTTGAAATAGGAAAAAACTTTCGTAATGAGGGAATCTCAACAAAACATAATCCTGAATTCACAAT GATAGAGTTTTATGTAGCCTATAAAGATTACAACTGGCTTATGGATTTTACAGAAAAACTTTTAAGTTACATTACTCAGA AAGTTTGTGGAAGTCTTCAGGTAAAATATGGAGATTATATAATTGATTTTACTCCGCCCTTTAAAAGAATTACCATGTTT GATGCATTGAAGAATAAAGGTGTACCTGAAGAAGTGATGAAAGATTGCAATCTTGCTTTTAAATGGGCTAAGGCAAAAGG TATAGAGATTCCTGAAGGAAGTAGTCTTAGTAAGGTGCTTGATGAGATATTTAAGGAAGTCGTTGAACCAGAGTTGATTC AACCAACATTTATTATTGATTATCCTGTTGAGCTTTCGCCATTGGCAAAGAGGAAAAAGGATAATCCAGAACTTGTTGAA AGATTTGAACTTTTTATCGCAGGCAGAGAAATGGCTAATGCCTTCTCAGAGTTGAATGATCCTCTTGACCAAAAAGAGAG ATTTCTACGCCAACTTGAAGAAAGACTTAAGGGTGATGAAGAAGTTCCAGAAATGGATGAAGATTTTGTAAGAGCACTTG AAATTGGTATGCCTCCAGCAGCAGGTGAAGGCATTGGAATAGATAGACTTGTCATGATTTTGACTAACAATCAATCAATA AGAGATGTTATTCTCTTTCCTCTTTTAAGACCAGAGACAAAATGA Protein sequence : MQETPLSELIQQRIKKLTALRSLGIEPYNGTFEPSDSTEDIFKKFGEFEKEHLENENITISVAGRVILLRDFGKAAFAHV QDSKGKIQIYLRKDILGEKFSLIKNLDIGDIVGVEGRLFRTKTNELTIEVHNFVFLSKSLRPLPEKWHGLKDIEARYRQR YVDLIVNPSVKETFVKRQLIIKYLREFLENEGFLEVETPMMHTIAGGARAKPFKTYHEALDMELYLRIAPELYLKRLLVG GFERVFEIGKNFRNEGISTKHNPEFTMIEFYVAYKDYNWLMDFTEKLLSYITQKVCGSLQVKYGDYIIDFTPPFKRITMF DALKNKGVPEEVMKDCNLAFKWAKAKGIEIPEGSSLSKVLDEIFKEVVEPELIQPTFIIDYPVELSPLAKRKKDNPELVE RFELFIAGREMANAFSELNDPLDQKERFLRQLEERLKGDEEVPEMDEDFVRALEIGMPPAAGEGIGIDRLVMILTNNQSI RDVILFPLLRPETK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-112 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002249051.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 9e-113 | 50 |
