|
Name : lysS (COPRO5265_1112) Accession : YP_002247421.1 Strain : Coprothermobacter proteolyticus DSM 5265 Genome accession: NC_011295 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 989276 - 990751 bp Length : 1476 bp Strand : - Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGGAAGAACGTGAGGTCAGACTTAGTAAGCTTGAGCAACTAAAACAGTTAGGTATTGATCCCTTTGGCGTCGTGATCAG AGATGTTGTGCCTATTTCCAAGGTGCGACAGGCGTCAGATGGTGATAATTTCAGCGTTATGGCTCGTGTTACCAGCATAC GTCAGCATGGCAAACTCACCTTCGCTGACCTCAAGGACTTCACTGGAAGGTTGCAGATTAGCTTCCGAAAAGACGTGTTG GGTGACAAATACGACTTTTTCAAGAAGTTTATTGATGTGGGAGACGTCATCTACGTTAGGGGTAGTGTTTATCATACGGG CCGTGGAGAGCTCACGTTGGATGTAGAAGACTTCAGGCTGCAGAGCAAATGCCTTAGGCCTTTACCAGAAAAATGGCATG GTGTAAAGGACCCAGAAGTGCGTTATCGTCAGAGGTATTTGGACCTTATCATCGACGATGATTCTCGTGAACGTTTTCGT AAAAGAGCTGATATCATAAAAGCCATTCGTGAGCTGCTGTGGTCCAAAGGTTTTGTAGAAGTGGAGACGCCCATTCTTCA ACCCATACCCAGCGGTGCCAGTGCTAAGCCATTCGTCACGCACCACAATGCTTTGGACATAGATCTTTACTTGCGCATTG CTCCGGAACTTTATCTGAAACGTCTTGTAGTGGGTGGTGTTCATAAGGTCTTCGAGCTGGGCAAAAACTTCCGAAATGAG GGCATTGACCAGAATCACAATCCTGAATTCACCATGCTGGAGCTTTATCAAACCCCGGGTGACTACGAAGACATGATGCG AATAACTGAGGACATATTCAGCGCTGCAGCTCAGGTTAGCGGTGCGGCCGAGTGCGTGAGTTTTAAGGGAATGACGGTCA ACTTAAGCCGTCCTTTTAAGCGTCTTACGTTTAAAGAAGCTTTTAAACACATTGCTAATTTGGACTGGAGCGATCTGGAT ACACTGGAAAAGGCCACGGCCGTTATGAAGGCAAATGGCATAGAAATGACGAAAACGCCAACCTGGGAGAATATCATACA AAAGCTGTTTGATGAACTTGTTCAGCCTCATTTGGTTGATCCCACATTTGTTCTCGATTATCCTGTGGAGATAAGCCCGC TTGCTAAGAGAAAGCCAGACGATCCGCGATTTGTGTATCGTTTTGAGCTTTTTGTGGCTGGCATGGAAATGGCGAACGCT TTTTCAGAGCTTCAAGACCCATTTGACCAAAAGGCACGTTTTGAGGAGCAGATGAAACTAAAGGAACAAGGTGAAGAAGA AGTCATACTCATGGATGAGGATTTCGTAGTAGCACTGGAATATGGTCTGCCGCCCACAGGAGGACTTGGCGTGGGCATAG ATAGGTTAGTCATGCTACTAACAGAGGCAGAGAACATAAAAGACGTGATTTGGTTCCCCACGTTAAGGCCGAAGTCCACG GAAGCCGTGGTAGAAATCACGGAGCTTGATCAGTAG Protein sequence : MEEREVRLSKLEQLKQLGIDPFGVVIRDVVPISKVRQASDGDNFSVMARVTSIRQHGKLTFADLKDFTGRLQISFRKDVL GDKYDFFKKFIDVGDVIYVRGSVYHTGRGELTLDVEDFRLQSKCLRPLPEKWHGVKDPEVRYRQRYLDLIIDDDSRERFR KRADIIKAIRELLWSKGFVEVETPILQPIPSGASAKPFVTHHNALDIDLYLRIAPELYLKRLVVGGVHKVFELGKNFRNE GIDQNHNPEFTMLELYQTPGDYEDMMRITEDIFSAAAQVSGAAECVSFKGMTVNLSRPFKRLTFKEAFKHIANLDWSDLD TLEKATAVMKANGIEMTKTPTWENIIQKLFDELVQPHLVDPTFVLDYPVEISPLAKRKPDDPRFVYRFELFVAGMEMANA FSELQDPFDQKARFEEQMKLKEQGEEEVILMDEDFVVALEYGLPPTGGLGVGIDRLVMLLTEAENIKDVIWFPTLRPKST EAVVEITELDQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-96 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002247421.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-96 | 46 |
