|
Name : SEN2795 (SEN2795) Accession : YP_002244867.1 Strain : Salmonella enterica P125109 Genome accession: NC_011294 Putative virulence/resistance : Virulence Product : outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2985102 - 2987801 bp Length : 2700 bp Strand : + Note : - DNA sequence : TTGATGAATAACACATGGAAAAGTGTTCTTTGCCCAATAGCGTGCGGAGTGGGAATGCTTCTAAGCCTCTCCCCTTATAG CGCGTCAGGCAAAGACATCGAATTTAATACCGATTTCCTCGATGTAAAAAATCGCGATAACGTTAACATTGCACAGTTTT CTCGTAAGGGTTTTATTCTGCCAGGCGTCTACCTTTTACAAATTAAAATTAACGGACAGACTCTGCCGCAGGAATTTCCT GTTAACTGGGTTATTCCAGAACATGATCCACAAGGAAGTGAGGTTTGCGCAGAACCAGAATTAGTTACGCAATTGGGTAT AAAGCCGGAACTCGCGGAAAAACTCGTCTGGATAACGCACGGTGAACGACAATGTCTGGCGCCAGATTCACTGAAAGGCA TGGATTTTCAGGCTGACCTGGGACACTCCACGCTGCTGGTGAATTTACCCCAGGCGTATATGGAATACAGCGATGTCGAC TGGGACCCGCCCGCCCGCTGGGATAATGGTATTCCCGGCATCATTCTGGATTACAACATTAATAATCAGCTCCGCCACGA TCAAGAAAGCGGCAGCGAAGAGCAAAGCATCAGCGGCAACGGGACGTTAGGCGCGAACCTGGGCGCATGGCGACTGCGGG CCGACTGGCAGGCCAGCTACGACCATCGTGACGATGACGAGAACACTTCCACCCTCCACGATCAGAGCTGGAGCCGCTAC TACGCCTATCGCGCACTACCGACGCTCGGGGCCAAACTTACGCTGGGCGAAAGCTATCTCCAGTCCGATGTTTTCGACAG CTTTAACTATATCGGTGCCAGCGTCGTTTCTGACGATCAGATGCTGCCGCCGAAACTGCGCGGCTATGCGCCGGAGATCG TGGGCATTGCGCGCTCTAATGCCAAAGTCAAAGTCTCCTGGCAGGGGCGCGTACTGTATGAAACGCAGGTGCCCGCAGGA CCGTTCCGTATTCAGGATCTCAACCAGTCCGTTTCCGGTACGTTGCACGTCACCGTGGAAGAGCAGAACGGTCAGACCCA GGAGTTTGACGTTAACACCGCATCGGTTCCCTTCCTGACGCGCCCCGGCATGGTGCGCTACAAGATGGCGCTGGGCCGCC CGCAGGACTGGGATCATCACCCCATTACCGGCACATTCGCCTCGGCGGAAGCTTCGTGGGGGGTCACCAACGGCTGGTCG CTCTATGGCGGCGCAATTGGAGAAAGCAACTATCAGGCCGTGGCGCTGGGAAGCGGTAAGGATCTTGGCGTGGTGGGCGC GGTGGCGGTCGACATTACGCACTCCATCGCCCACATGCCGCAAGACGACGGGTTTGACGGCGAAACGCTGCAGGGTAACT CATATCGCATCAGCTACTCCCGTGACTTTGATGAAATCGACAGCCGACTAACCTTTGCCGGATACCGCTTCTCAGAAAAG AACTTTATGAGCATGAGCGACTATCTGGATGCGAAAACCTATCATCATCTCAATGCCGGTCACGAAAAAGAACGCTATAC GGTCACCTATAACCAGAACTTCCGTGAACAGGGCATGAGCGCCTATTTCAGCTACTCACGCAGTACCTTCTGGGACAGCC CGGATCAGAGTAACTATAACCTGTCTCTTTCCTGGTACTTCGACTTAGGGTCGATAAAAAATCTCAGTGCGTCGCTGAAC GGCTATCGCAGCGAATATAACGGTGATAAAGATGATGGCGTTTATATCTCGCTGTCTGTTCCCTGGGGCAATGATTCCAT CAGCTACAACGGTACGTTTAACGGTAGTCAACACCGTAATCAGCTCGGCTATTCCGGCCACAGCCAGAACGGCGATAACT GGCAGCTTCACGTCGGGCAGGATGAACAAGGCGCACAGGCAGACGGTTATTACAGCCATCAGGGCGCGCTGACGGACATC GATCTGAGCGCGGATTATGAAGAAGGATCGTACCGTTCGCTGGGCATGTCGCTGCGCGGCGGCATGACGCTGACCACCCA GGGCGGCGCGCTACACCGGGGAAGTTTAGCGGGCAGCACACGTTTGCTGGTTGATACCGACGGCATTGCGGACGTCCCCG TTAGCGGTAACGGCTCGCCAACCTCAACCAACATTTTCGGCAAGGCCGTGATTGCGGATGTCGGAAGCTATTCGCGCAGC CTGGCGCGTATCGATCTGAACAAATTGCCGGAGAAGGCGGAAGCTACTAAGTCGGTTGTGCAGATCACGCTCACCGAAGG CGCCATCGGCTACCGTCACTTTGACGTGGTCAGCGGCGAGAAAATGATGGCGGTTTTCCGGCTGGCAGACGGCGACTTCC CACCGTTCGGCGCCGAAGTGAAAAACGAGCGCCAGCAGCAGTTGGGCCTGGTGGCCGATGACGGCAACGCCTGGCTGGCG GGCGTAAAAGCCGGGGAAACATTGAAAGTCTTCTGGGATGGCGCGGCGCAGTGTGAAGCATCACTCCCGTCCACGTTTAC ACCGGAGCTATTGGCCAACGCGCTATTGCTGCCGTGCAAAATGCTGGAAGGTCAGCCCCCCACCGCACCGCAGAAAAGTT CTCCGCTGCCTGCGCAACCGCTAATCCAGGAACATACGCAAACCGATGGCCAACCGGCCGCGCCGGTGGCGACAACCACT CAAACCCCGCCCATACCGCTGGCTGACAACCATGCGGTGAATCGCAAGGATATGGAATAA Protein sequence : MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFP VNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVD WDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRY YAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAG PFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWS LYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEK NFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLN GYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDI DLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRS LARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLA GVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTT QTPPIPLADNHAVNRKDME |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 7e-173 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 1e-169 | 45 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 7e-168 | 45 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 5e-168 | 45 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 2e-169 | 45 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-169 | 45 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-169 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SEN2795 | YP_002244867.1 | outer membrane usher protein | VFG1548 | Protein | 7e-170 | 45 |
| SEN2795 | YP_002244867.1 | outer membrane usher protein | VFG0884 | Protein | 1e-169 | 45 |
| SEN2795 | YP_002244867.1 | outer membrane usher protein | VFG0895 | Protein | 9e-170 | 45 |
