Gene Information

Name : sipD (SEN2724)
Accession : YP_002244796.1
Strain : Salmonella enterica P125109
Genome accession: NC_011294
Putative virulence/resistance : Virulence
Product : pathogenicity island 1 effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2911415 - 2912446 bp
Length : 1032 bp
Strand : -
Note : -

DNA sequence :
ATGCTTAATATTCAAAATTATTCCGCTTCTCCTCATCCGGGGATCGTTGCCGAACGGCCGCAGACTCCCTCGGCGAGCGA
GCACGTCGAGACTGCCGTGGTACCGTCTACCACAGAACATCGCGGTACAGATATCATTTCATTATCGCAGGCGGCTACTA
AAATCCAGCAGGCACAGCAGACGCTGCAGTCAACGCCACCGATCTCTGAAGAGAATAATGACGAGCGCACGCTGGCGCGC
CAGCAGTTGACCAGCAGCCTGAATGCGCTGGCGAAGTCTGGCGTGTCATTATCCGCAGAACAAAATGAGAACCTGCGGAG
CGCGTTTTCTGCGCCGACGTCGGCCTTATTTAGCGCTTCGCCTATGGCGCAGCCGAGAACAACCATTTCTGATGCTGAGA
TTTGGGATATGGTTTCCCAAAATATATCGGCGATAGGTGACAGCTATCTGGGCGTTTATGAAAACGTTGTCGCAGTCTAT
ACCGATTTTTATCAGGCCTTCAGTGATATTCTTTCCAAAATGGGAGGCTGGTTATTACCAGGTAAGGACGGTAATACCGT
TAAGCTAGATGTTACCTCACTCAAAAATGATTTAAACAGTTTAGTCAATAAATATAATCAAATAAACAGTAATACCGTTT
TATTTCCAGCGCAGTCAGGCAGCGGCGTTAAAGTAGCCACTGAAGCGGAAGCGAGACAGTGGCTCAGTGAATTGAATTTA
CCGAATAGCTGCCTGAAATCTTATGGATCCGGTTATGTCGTCACCGTTGATCTGACGCCATTACAAAAAATGGTTCAGGA
TATTGATGGTTTAGGCGCGCCGGGAAAAGACTCAAAACTCGAAATGGATAACGCCAAATATCAAGCCTGGCAGTCGGGTT
TTAAAGCGCAGGAAGAAAATATGAAAACCACATTACAGACGCTGACGCAAAAATATAGCAATGCCAATTCATTGTACGAC
AACCTGGTAAAAGTGCTGAGCAGTACGATAAGTAGCAGCCTGGAAACCGCCAAAAGCTTCCTGCAAGGATAA

Protein sequence :
MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTDIISLSQAATKIQQAQQTLQSTPPISEENNDERTLAR
QQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVY
TDFYQAFSDILSKMGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNL
PNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEENMKTTLQTLTQKYSNANSLYD
NLVKVLSSTISSSLETAKSFLQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sipD YP_217802.1 cell invasion protein Virulence SPI-1 Protein 1e-145 99
sipD NP_461804.1 translocation machinery component Virulence SPI-1 Protein 1e-146 99
sipD NP_457277.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 5e-129 88
sipD NP_806486.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 5e-129 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sipD YP_002244796.1 pathogenicity island 1 effector protein VFG0544 Protein 5e-147 99
sipD YP_002244796.1 pathogenicity island 1 effector protein VFG0985 Protein 8e-49 41