Gene Information

Name : KPK_4944 (KPK_4944)
Accession : YP_002240722.1
Strain : Klebsiella pneumoniae 342
Genome accession: NC_011283
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 4984461 - 4984946 bp
Length : 486 bp
Strand : -
Note : identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608

DNA sequence : 
ATGGCCCAGCATGGTTGTTTGCTCCCCGCGACCTCCGGATTAACCCCCTATGCCCAACGCACCATTCGTCGTGCCATCAA
CCTGCTGGATAAATATTTGCGCCAGCCCGGTATATCCTTTACCTCTAGTACTGCTGCCCGTGACTGGCTTCGGTTACAGC
TGGCAGGACAAGAACGGGAAGTGTTTATGGTGCTCTATCTCAATAACCAGCACTGTTTATTGGAGAGCGAAACGCTGTTT
GCTGGTTCGATTAACCATGTCCAGGTCCATCCCCGTGAGGTAGTGAAGTCAGCGCTTCGCTTCAATGCTGCAGCTGTCGT
ACTGGCGCATAACCATCCATCCGGTGACCCGGAGCCCAGCCAATGCGACCGCAACATTACGGGCAGGCTTAAAGAAGCGC
TGGCACTAGTTGATGTGAACACGCTCGATCATCTGGTCATCGGTTCAGAGGGCATTGTGTCGTTCGCAGAGCGAGGCTGG
ATATGA

Protein sequence : 
MAQHGCLLPATSGLTPYAQRTIRRAINLLDKYLRQPGISFTSSTAARDWLRLQLAGQEREVFMVLYLNNQHCLLESETLF
AGSINHVQVHPREVVKSALRFNAAAVVLAHNHPSGDPEPSQCDRNITGRLKEALALVDVNTLDHLVIGSEGIVSFAERGW
I

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 1e-35 62
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-36 58
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 6e-37 57
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 9e-37 57
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 8e-37 57
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 1e-36 57
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 3e-36 57
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-36 57
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 9e-37 57
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-36 57
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-36 57
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 1e-36 57
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 1e-36 57
unnamed AAL08475.1 unknown Not tested SRL Protein 1e-36 57
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-35 57
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-35 57
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 1e-36 56
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 7e-36 56
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 8e-35 55
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 2e-27 53
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-32 50
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-32 50
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-33 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-26 43
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 6e-24 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KPK_4944 YP_002240722.1 DNA repair protein RadC VFG1528 Protein 7e-37 57
KPK_4944 YP_002240722.1 DNA repair protein RadC VFG1617 Protein 5e-37 57
KPK_4944 YP_002240722.1 DNA repair protein RadC VFG0660 Protein 3e-36 57
KPK_4944 YP_002240722.1 DNA repair protein RadC VFG1066 Protein 5e-37 57
KPK_4944 YP_002240722.1 DNA repair protein RadC VFG1678 Protein 5e-37 56
KPK_4944 YP_002240722.1 DNA repair protein RadC VFG1119 Protein 5e-33 50