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Name : lpfC (KPK_2634) Accession : YP_002238465.1 Strain : Klebsiella pneumoniae 342 Genome accession: NC_011283 Putative virulence/resistance : Virulence Product : outer membrane usher protein LpfC Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2694628 - 2697162 bp Length : 2535 bp Strand : - Note : identified by similarity to SP:P43662; match to protein family HMM PF00577 DNA sequence : ATGATGATGGCAATGGATTATATAAAAGTACGATCTCCACGGTTGGCATTGTTGATAACCATCGCGCTCTTCGGTACTAC ACAAAATAGCTATAGTCGCGATTTTTTTAACCCAGAGCTGGTTGAACTGGATAATCCAGGGACAGAAAGAGTCGATCTTT CAGGTTTTGAATCTGGTGAGCAAGCCCCCGGGAATTATCATGTTGATGTCGTCCTGGACGATCAGTTAGTCGATACCCGC GATATTATGTTTGTTTTGCTGAAAGAGCGTGGCGATGAAGAAAAATTAGTCCCCTGTTTATCCATTGAGCAATTAGCAAG CTGGGGAGTCAAGACTGGACTTTTTCCTGCGTTAAAGGGCGAAACCTCCTGTGCGAACCTGTCCGCCATTCCTCAGGCCA GTACAGATTTCCAGTTTGCCATGCAGCGTCTGGTATTGAGCATTCCGCAAGCGGCAATCTCAGCGCAAGCTCGTGGATCG GTGCCACCAGATCGCTGGGATGAAGGGATTAACGCCGCCCTGCTTAACTACAGTCTGAGTGGGGCGAATAACTGGGCCAA AAATAACAACAGCAGCAACAGTGATAGCCAGTATGCCAACCTGCGTCCGGGAGTAAACATCGGCCCCTGGCGGTTAAGAA ATTACACCACCTGGTCGCGAGATTCACAGGGGCACGATGCCTGGGACACGGTTTATACCTATGCACAACGTACGATAATC CCGTTAAAGTCGCAGCTCACACTGGGTGACAGTTCTGCCCCGGCAGATGTTTTCGACAGTATTCCTTTCCGGGGAGGACA ACTTGCTTCCGATGATGACATGCTGCCCGACTCCCTTAAGGGCTATGCCCCTGTGGTGCGTGGTATCGCCCGGACCAATG CCCAGGTGATCATCCGCCAGAATGGCTATCAGATTTACCAGAGCTTTGTGGCGCCGGGCGCGTTTGAAATTACGGACATG TATCCTACCGGCGGCGCCGGCGATCTTGATGTCACGATTAAAGAGGCTGATGGTAGTGAGCAGCACTTTAGCGTGCCATT TGCCTCACTTCCCGTATTACAGCGTGAAGGCCGAATAAAATATGCGTTAACGGGCGGCCAATATCGTTCGTACAACGGCA GCGTGGATAAGACACCCTTTGGCCAGATGAGCGTTATTCTCGGCTTGCCCTACGGGTTCACGTTTTACGGTGGATTGCAG GAGTCGAGTAAATATCAGTCGCTTGCCGCGGGCGTGGGTAAAAACATGGGTGACTTTGGCGCTATCTCCAGCGACATCAC CCAGGGCTGGTCCACGCCGTACAATATGCCGAAATCCAACGGTCAATCCTGGCGGGCTCGATACAGTAAAAACTTTGCTT CAACAGGCACTAACTTTGCGATTGCCGGCTACCGCTATTCGACCAGCGACTACTATGGCATGCAGGAGGTCCTTGATTCT TATGGTGACAGTAATGCGCTCCAGGATAGACGCCGCAACCGTGCGGAGCTGACGTTGAGCCAGGGGTTGGGAGATAATCT GGGATCGTTGATGCTGAACGCCTCGCATGAAGATTACTGGAATTCAGGTAAGGCGATGGAATCCTGGAGCGTTGGGTATA ACAACTACTGGCACAGTATCAGTTACGGTCTGACATGGACCCTGAGCAGGAATGGTAGTACGGGATCGTACAGCGCTCAC CAGAGCGACGGTAAAAACCAGATGCTGGCGCTAAATATCAGCATCCCGCTGGAAAAACTCTTGCCGCAGACATGGGCAAA CTATGGCATGAATGCCAGCAAGCATAACGGTACGACACACAGCGTTGGGTTGAATGGCGTTGCGATGCCGAATAATGCGC TTAACTGGAATATTCAACAGGGTTACGGCACTCACGACGTGGCCTATACCGGCAATATGAATGGTGATTATCGAGGCACC TATGGCGAACTGACGGCCGGGTACAGCTATGACAAAAATACCGACCGTCTGAATTATGGGATTCAGGGAGGCGTGGTTGC GCATGCCAATGGCGTGACGTTCTCTCAGCCACTGGGTGAAACCAACGTGCTGATTGCTGCCCCCGGGGCTGCCGGTGTAG GAATCCAGAATATGACCGGCGCGACAACCGATTATCGCGGATACACGCTTGCCTCTAACTTAATGCCTTATCGCAAAAAT GATGTGTCATTAATCACTGAAACATTGCCGGCTAACGTTGAGTTAGAACAAACGGTCAAAACCGTGGTCCCGACGCGTGG CGCGATTGTCAGGGCGAACTATGTGGCAAGCGTAGGCGTTCGCATGTTGATGAGCTTGACCCAGCAAAACGGCCAGTCGG TTCCGTTTGGTGCAATTGCCAGCATTGAAGGCGCAGAACACAGCAGCTTTATCGTTGGCGAAAGCGGTCAGGTGTATTTG ACGGGCCTGGCTCCCCAGGTCAACCTGACCGTGAAATGGGGAAATCAATCCGCAAACACCTGCAGGGTGCATTACTCGAT TAATATGGCGAAGCTGAATAACGATGTGATTATCGATAATGCTGTTTGCCGTTAA Protein sequence : MMMAMDYIKVRSPRLALLITIALFGTTQNSYSRDFFNPELVELDNPGTERVDLSGFESGEQAPGNYHVDVVLDDQLVDTR DIMFVLLKERGDEEKLVPCLSIEQLASWGVKTGLFPALKGETSCANLSAIPQASTDFQFAMQRLVLSIPQAAISAQARGS VPPDRWDEGINAALLNYSLSGANNWAKNNNSSNSDSQYANLRPGVNIGPWRLRNYTTWSRDSQGHDAWDTVYTYAQRTII PLKSQLTLGDSSAPADVFDSIPFRGGQLASDDDMLPDSLKGYAPVVRGIARTNAQVIIRQNGYQIYQSFVAPGAFEITDM YPTGGAGDLDVTIKEADGSEQHFSVPFASLPVLQREGRIKYALTGGQYRSYNGSVDKTPFGQMSVILGLPYGFTFYGGLQ ESSKYQSLAAGVGKNMGDFGAISSDITQGWSTPYNMPKSNGQSWRARYSKNFASTGTNFAIAGYRYSTSDYYGMQEVLDS YGDSNALQDRRRNRAELTLSQGLGDNLGSLMLNASHEDYWNSGKAMESWSVGYNNYWHSISYGLTWTLSRNGSTGSYSAH QSDGKNQMLALNISIPLEKLLPQTWANYGMNASKHNGTTHSVGLNGVAMPNNALNWNIQQGYGTHDVAYTGNMNGDYRGT YGELTAGYSYDKNTDRLNYGIQGGVVAHANGVTFSQPLGETNVLIAAPGAAGVGIQNMTGATTDYRGYTLASNLMPYRKN DVSLITETLPANVELEQTVKTVVPTRGAIVRANYVASVGVRMLMSLTQQNGQSVPFGAIASIEGAEHSSFIVGESGQVYL TGLAPQVNLTVKWGNQSANTCRVHYSINMAKLNNDVIIDNAVCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 4e-137 | 42 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 8e-136 | 41 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 8e-136 | 41 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 8e-139 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lpfC | YP_002238465.1 | outer membrane usher protein LpfC | VFG0454 | Protein | 2e-161 | 45 |
| lpfC | YP_002238465.1 | outer membrane usher protein LpfC | VFG0876 | Protein | 1e-141 | 41 |
| lpfC | YP_002238465.1 | outer membrane usher protein LpfC | VFG0446 | Protein | 2e-139 | 41 |
