Gene Information

Name : fimD (SG0558)
Accession : YP_002225648.1
Strain : Salmonella enterica 287/91
Genome accession: NC_011274
Putative virulence/resistance : Virulence
Product : outer membrane usher protein FimD
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 603901 - 606513 bp
Length : 2613 bp
Strand : +
Note : -

DNA sequence :
ATGAAGAAGACAACCTGGTTTGCAGGGCGATTTCCCGGCTATGTATCACCGTTAAGCGGCGTGGCGCTGTCGGTGCTGGC
GGCGCTGTGTCCGCTGACGAGCCGCGGCGAAAGTTATTTCAACCCTGCGTTTTTGTCGGCGGATACCGCGTCCGTGGCGG
ATTTATCTCGCTTTGAAAAAGGTAATCATCAGCCGCCTGGTATTTACCGGGTGGATATCTGGCGTAACGACGAATTCGTA
GCGACGCAGGATATTCGTTTTGAGGCGGGCGCCGTGGGCGCCGGCGATAAATCCGGCGGCCTGATGCCTTGTTTTACACC
GGAGTGGATTAAACGGCTGGGCGTGAATACCGCGGTGTTCCCTGTCTCAGATAAAGGCGTCGATACCACGTGTATTCACC
TTCCTGAGAAAATCCCGGGCGCGGAGGTCGCGTTCGATTTCGCGTCGATGCGCTTAAACATTAGCTTGCCGCAGGCGTCA
TTGCTCAACAGCGCGCGTGGCTATATCCCGCCGGAAGAGTGGGATGAAGGGATACCCGCCGCACTCATTAATTACAGTTT
TACCGGTAGCCGCGGAACAGACAGCGATAGCTATTTTTTGAGTCTGCTGAGCGGGTTGAACTATGGCCCCTGGCGGCTGC
GTAATAACGGAGCCTGGAGCTATTCGAAAGGGGACGGCTATCATTCGCAACGCTGGAACAACATTGGCACCTGGGTACAG
CGCGCCATCATTCCGCTAAAAAGCGAACTGGTCATGGGGGACAGCAATACCGGGAACGATGTTTTCGACAGCGTCGGCTT
TCGCGGAGCGCGGCTGTACTCTTCTGACAATATGTATCCCGATAGCCTGCAGGGCTACGCCCCCACGGTCAGAGGGATCG
CCCGGACGGCGGCAAAGCTGACGATACGACAGAACGGGTATGTTATCTACCAAAGCTATGTGTCGCCGGGCGCGTTTGCG
ATTACCGATCTTAATCCTACCTCTTCCAGCGGCGACCTTGAGGTGACGGTAGATGAAAAAGACGGTAGCCAACAACGTTA
CACGGTGCCTTACTCTACCGTTCCGCTATTGCAGCGTGAGGGTAGGGTGAAGTATGACCTGGTGGCCGGGGATTTTCGCA
GCGGCAATAGTCAGCAGTCTTCGTCATTCTTTTTCCAGGGAACGGTGATTGCCGGCCTGCCTGCGGGGCTGACGGCTTAC
GGCGGTACGCAACTTGCCGATCGTTACCGTGCCGTGGTGGTCGGGGCGGGGCGAAATTTGGGCGACTGGGGAGCCGTGTC
GGTCGATGTCACACATGCGCGTAGCCAACTGGCAGATGACAGCACCCATCAGGGGCAATCGTTGCGTTTTCTGTACGCCA
AATCGCTGAATAATTACGGGACTAATTTTCAATTGCTGGGTTACCGCTATTCCACGCGCGGATTTTACACCCTGGATGAT
GTGGCATACCGCAGTATGGAAGGGTACGACTACGAATACGATAGCGACGGACGCCGCCATAAAGTGCCGGTGGCGCAGAG
CTACCACAATCTCCGCTACAGCAAAAAAGGCCGCTTTCAGGTCAATATTTCGCAAAACCTGGGGGATTACGGGTCACTGT
ATCTTTCCGGCAGTCAACAAAATTACTGGAATACGGCGGATACCAATACCTGGTATCAACTGGGATACGCCAGTGGATGG
CAAGGCATAAGTTATTCGCTGTCATGGTCGTGGAACGAGTCGGTGGGGATCTCAGGCGCCGATCGCATTCTGGCATTCAA
TATGTCCGTTCCGTTTAGCGTTCTGACCGGACGGCGCTATGCGCGCGACACTATTCTTGATCGTACTTATGCCACGTTTA
ACGCCAACCGCAACCGCGACGGCGACAATAGCTGGCAGACCGGCGTGGGCGGCACGCTTCTGGAAGGACGTAATCTGAGC
TACAGCGTGACGCAAGGGCGTAGCAGTAGCAATGGTTATAGCGGCAGCGCCAGCGCTAGCTGGCAGGCGACGTATGGCAC
GCTGGGCGTGGGATATAACTACGATCGCGATCAGCATGACTATAACTGGCAACTTTCCGGCGGCGTGGTCGGTCATGCGG
ATGGTATTACGTTTAGCCAACCGTTGGGCGATACCAATGTCTTGATTAAAGCGCCGGGAGCGAAAGGCGTGCGCATCGAA
AACCAGACCGGCGTGAAAACGGACTGGCGGGGTTATGCGGTAATGCCCTACGCCACGGTATATCGCTATAACCGCGTCGC
GTTAGATACCAACATGATGGACAACCATACCGATGTCGAAAATAACGTCAGCAGCGTAGTGCCGACAGAGGGCGCTCTGG
TGCGGGCCGCTTTTGATACGCGGATAGGCGTAAGGGCAATCATTACCGCGAGGCTTGGCGGACGTCCGTTACCGTTTGGC
GCGATAGTACGAGAAACCGCCAGCGGTATTACCAGTATGGTCGGCGATGACGGGCAAATTTATCTGAGCGGCTTGCCGCT
AAAAGGTGAACTGTTCATCCAGTGGGGAGAGGGGAAAAACGCGCGTTGTATCGCCCCTTACGCCCTGGCGGAGGATAGCC
TGAAGCAGGCGATTACGATAGCCAGCGCGACCTGTATCCGTCCGTCGTCATAA

Protein sequence :
MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV
ATQDIRFEAGAVGAGDKSGGLMPCFTPEWIKRLGVNTAVFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS
LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWSYSKGDGYHSQRWNNIGTWVQ
RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA
ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSSFFFQGTVIAGLPAGLTAY
GGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD
VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGW
QGISYSLSWSWNESVGISGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS
YSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIE
NQTGVKTDWRGYAVMPYATVYRYNRVALDTNMMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG
AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 1e-177 49
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 1e-173 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimD YP_002225648.1 outer membrane usher protein FimD VFG0446 Protein 0.0 99
fimD YP_002225648.1 outer membrane usher protein FimD VFG0876 Protein 2e-179 49
fimD YP_002225648.1 outer membrane usher protein FimD VFG1645 Protein 7e-174 48
fimD YP_002225648.1 outer membrane usher protein FimD VFG0912 Protein 7e-174 48
fimD YP_002225648.1 outer membrane usher protein FimD VFG0454 Protein 2e-150 41