|
Name : SG2860 (SG2860) Accession : YP_002227697.1 Strain : Salmonella enterica 287/91 Genome accession: NC_011274 Putative virulence/resistance : Virulence Product : outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2975544 - 2978243 bp Length : 2700 bp Strand : + Note : - DNA sequence : TTGATGAATAACACATGGAAAAGTGTTCTTTGCCCAATAGCGTGCGGAGTGGGAATGCTTCTAAGCCTCTCCCCTTATAG CGCGTCAGGCAAAGACATCGAATTTAATACCGATTTCCTCGATGTAAAAAATCGCGATAACGTTAACATTGCACAGTTTT CTCGTAAGGGTTTTATTCTGCCAGGCGTCTACCTTTTACAAATTAAAATTAACGGACAGACTCTGCCGCAGGAATTTCCT GTTAACTGGGTTATTCCAGAACATGATCCACAAGGAAGTGAGGTTTGCGCAGAACCAGAATTAGTTACGCAATTGGGTAT AAAGCCGGAACTCGCGGAAAAACTCGTCTGGATAACGCACGGTGAACGACAATGTCTGGCGCCAGATTCACTGAAAGGCA TGGATTTTCAGGCTGACCTGGGACACTCCACGCTGCTGGTGAATTTACCCCAGGCGTATATGGAATACAGCGATGTCGAC TGGGACCCGCCCGCCCGCTGGGATAATGGTATTCCCGGCATCATTCTGGATTACAACATTAATAATCAGCTCCGCCACGA TCAAGAAAGCGGCAGCGAAGAGCAAAGCATCAGCGGCAACGGGACGTTAGGCGCGAACCTAGGCGCATGGCGACTGCGGG CCGACTGGCAGGCCAGCTACGACCATCGTGACGATGACGAGAACACTTCCACCCTCCACGATCAGAGCTGGAGCCGCTAC TACGCCTATCGCGCACTACCGACGCTCGGGGCCAAACTTACGCTGGGCGAAAGCTATCTCCAGTCCGATGTTTTCGACAG CTTTAACTATATCGGTGCCAGCGTCGTTTCTGACGATCAGATGCTGCCGCCGAAACTGCGCGGCTATGCGCCGGAGATCG TGGGCATTGCGCGCTCTAATGCCAAAGTCAAAGTCTCCTGGCAGGGGCGCGTACTGTATGAAACGCAGGTGCCCGCAGGA CCGTTCCGTATTCAGGATCTCAACCAGTCCGTTTCCGGTACGTTGCACGTCACCGTGGAAGAGCAGAACGGTCAGACCCA GGAGTTTGACGTTAACACCGCATCGGTTCCCTTCCTGACGCGCCCCGGCATGGTGCGCTACAAGATGGCGCTGGGCCGCC CGCAGGACTGGGATCATCACCCCATTACCGGCACATTCGCCTCGGCGGAAGCTTCGTGGGGGGTCACCAACGGCTGGTCG CTCTATGGCGGCGCAATTGGAGAAAGCAACTATCAGGCCGTGGCGCTGGGAAGCGGTAAGGATCTTGGCGTGGTGGGCGC GGTGGCGGTCGACATTACGCACTCCATCGCCCACATGCCGCAAGACGACGGGTTTGACGGCGAAACGCTGCAGGGTAACT CATATCGCATCAGCTACTCCCGTGACTTTGATGAAATCGACAGCCGACTAACCTTTGCCGGATACCGCTTCTCAGAAAAG AACTTTATGAGCATGAGCGACTATCTGGATGCGAAAACCTATCATCATCTCAATGCCGGTCACGAAAAAGAACGCTATAC GGTCACCTATAACCAGAACTTCCGTGAACAGGGCATGAGCGCCTATTTCAGCTACTCACGCAGTACCTTCTGGGACAGCC CGGATCAGAGTAACTATAACCTGTCTCTTTCCTGGTACTTCGACTTAGGGTCGATAAAAAATCTCAGTGCGTCGCTGAAC GGCTATCGCAGCGAATATAACGGTGATAAAGATGATGGCGTTTATATCTCGCTGTCTGTTCCCTGGGGCAATGATTCCAT CAGCTACAACGGTACGTTTAACGGTAGTCAACACCGTAATCAGCTCGGCTATTCCGGCCACAGCCAGAACGGCGATAACT GGCAGCTTCACGTCGGGCAGGATGAACAAGGCGCACAGGCAGACGGTTATTACAGCCATCAGGGCGCGCTGACGGACATC GATCTGAGCGCGGATTATGAAGAAGGATCGTACCGTTCGCTGGGCATGTCGCTGCGCGGCGGCATGACGCTGACCACCCA GGGCGGCGCGCTACACCGGGGAAGTTTAGCGGGCAGCACACGTTTGCTGGTTGATACCGACGGCATTGCGGACGTCCCCG TTAGCGGTAACGGCTCGCCAACCTCAACCAACATTTTCGGCAAGGCCGTGATTGCGGATGTCGGAAGCTATTCGCGCAGC CTGGCGCGTATCGATCTGAACAAATTGCCGGAGAAGGCGGAAGCTACTAAGTCGGTTGTGCAGATCACGCTCACCGAAGG CGCCATCGGCTACCGTCACTTTGACGTGGTCAGCGGCGAGAAAATGATGGCGGTTTTCCGGCTGGCAGGCGGCGACTTCC CACCGTTCGGCGCCGAAGTGAAAAACGAGCGCCAGCAGCAGTTGGGCCTGGTGGCCGATGACGGCAACGCCTGGCTGGCG GGCGTAAAAGCCGGGGAAACATTGAAAGTCTTCTGGGATGGCGCGGCGCAGTGTGAAGCATCACTCCCGTCCACGTTTAC ACCGGAGCTATTGGCCAACGCGCTATTGCTGACGTGCAAAATGCTGGAAGGTCAGCCCCCCACCGCACCGCAGAAAAGTT CTCCGCTGCCTGCGCAACCGCTAATCCAGGAACATACGCAAACCGATGGCCAACCGGCCGCGCCGGTGGCGACAACCACT CAAACCCCGCCCATACCGCTGGCTGACAACCATGCGGTGAATCGCAAGGATATGGAATAA Protein sequence : MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFP VNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVD WDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRY YAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAG PFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWS LYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEK NFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLN GYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDI DLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRS LARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLAGGDFPPFGAEVKNERQQQLGLVADDGNAWLA GVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLTCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTT QTPPIPLADNHAVNRKDME |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 7e-172 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 1e-168 | 45 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 5e-167 | 45 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 4e-167 | 45 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 3e-168 | 45 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-168 | 45 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 2e-168 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SG2860 | YP_002227697.1 | outer membrane usher protein | VFG1548 | Protein | 8e-169 | 45 |
| SG2860 | YP_002227697.1 | outer membrane usher protein | VFG0884 | Protein | 1e-168 | 45 |
| SG2860 | YP_002227697.1 | outer membrane usher protein | VFG0895 | Protein | 8e-169 | 45 |
