Gene Information

Name : hofB (SG0145)
Accession : YP_002225285.1
Strain : Salmonella enterica 287/91
Genome accession: NC_011274
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : N : Cell motility
COG ID : COG2804
EC number : -
Position : 167921 - 169267 bp
Length : 1347 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAGACGCTCAGCTCAACACCTTGTGTCAACGTCATCAGGCTGTACTGATCAATAGCGCCAGCAACAGTATCACTGT
TGCGGTGGTCGACGCGCCCTCTCATGCGTTACTGGACGCTCTGCATTTCGCCACGCAAAAACAGATTGATATTGTGTGCT
GGACTCGCCAGCAAATGGAAAATCATCGGCATAAGCCGGATCAGGCACCCTCGGCAAACGCCGCGAAAGGCGGAGAAACC
GCAGCCCAGCTTCTCAATCAGACATTACGCTCGGCGATGGCGAAACGCGCCTCTGATATCCATCTCGAACCCGGCGCCAG
CCGCTACCGAATAAGACTCCGCATCGACGGCGTTCTTCATATTCTGCAGGACATCGCCAAAGAGACGGGGCTTGCGCTGA
CGGCCAGATTGAAAGTCCTGGGAAATTTGGACATCGCTGAACATCGACTGCCGCAGGACGGGCAATTTACCGTTGACCTG
GCGGGCGACAGCATCTCTTTTCGTATCGCCACGCTTCCCTGTAAAGAAGGCGAAAAAGTCGTCTTACGGTTGTTGCATCA
GGTTGAACAAACGCTGGATCTGGACACGCTGGGCATGTACGGGGCACAACTTACCGCTTTTAGACAAGCCCTACAGCAAC
CTCAGGGGCTGGTACTGGTGACTGGCCCCACCGGTAGCGGAAAAACGGTCACGCTATACAGCGCGCTACAAACCCGGAAT
ACGCCGGGTATCAACCTCTGTAGCGTTGAGGATCCGATAGAAATTCCACTGGATGGGATTAACCAGACGCAGATCCATCC
CCGCGCCGGGCTCACCTTTCAAAATGTGCTGCGTGCGCTATTACGCCAGGACCCTGACATCATCATGGTAGGTGAAATTC
GTGACGGCGACACCGCAGAAATCGCCATTAAGGCGGCACAAACGGGCCATCTGGTACTTTCAACGCTACATACGAACTCC
ACCAGTGAAACCCTGATACGTTTGCAGCAAATGGGCGTAGCACGCTGGATGATCTCATCGGCGCTTACGCTGGTGGTAGC
GCAACGCCTGGTAAGGAAGCTTTGCCCGCACTGCAAACAGCGCCTGAGCGATCCCGTAGTGCTATCGCCCAATCTTTGGC
CCAGCGCGCTACCGCGCTGGCAGGCAAACGGCTGTCAGCATTGCTACCACGGCTTTTATGGCCGAACCGCGTTATTCGAA
GTGTTAACCGTTACCCCGGCATTACGTCAGTTAATTGCGAGCGGCGCATCGGCGCAAGCACTGGAAGCCCACCTCCAACA
GACCGGTACAGGGACGCTTTTTGAAAATGGCTGTCGCGCCGTTGAGCAAGGCATGACGCCCTTTTAA

Protein sequence : 
MKDAQLNTLCQRHQAVLINSASNSITVAVVDAPSHALLDALHFATQKQIDIVCWTRQQMENHRHKPDQAPSANAAKGGET
AAQLLNQTLRSAMAKRASDIHLEPGASRYRIRLRIDGVLHILQDIAKETGLALTARLKVLGNLDIAEHRLPQDGQFTVDL
AGDSISFRIATLPCKEGEKVVLRLLHQVEQTLDLDTLGMYGAQLTAFRQALQQPQGLVLVTGPTGSGKTVTLYSALQTRN
TPGINLCSVEDPIEIPLDGINQTQIHPRAGLTFQNVLRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGHLVLSTLHTNS
TSETLIRLQQMGVARWMISSALTLVVAQRLVRKLCPHCKQRLSDPVVLSPNLWPSALPRWQANGCQHCYHGFYGRTALFE
VLTVTPALRQLIASGASAQALEAHLQQTGTGTLFENGCRAVEQGMTPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 3e-68 46
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-68 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hofB YP_002225285.1 hypothetical protein VFG2048 Protein 4e-70 47
hofB YP_002225285.1 hypothetical protein VFG2426 Protein 2e-69 46
hofB YP_002225285.1 hypothetical protein VFG0182 Protein 8e-71 44
hofB YP_002225285.1 hypothetical protein VFG1876 Protein 2e-73 43