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Name : smpB (BDU_38) Accession : YP_002221702.1 Strain : Borrelia duttonii Ly Genome accession: NC_011229 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 42006 - 42455 bp Length : 450 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAGCTCAATATTGCTTGAAAACAAAAAAGCAAGATTTAATTACTTTATTGAAGACAGACTAAGTTGTGGTATTGTTTT AAAAGGAACTGAAGTAAAATCTATTAAATTAAAAAAATTTACATTCAATGACAGCTTTGCTAATATAAAAAAAGATGAGA TATGGCTTGAAAATTTACATATAGCAAAATACAAAGAAGGTAATATCTTTAATCATGAAGAAACAAGACGTAGAAAATTA CTTATAACAAAGAAAGAAATACAAAAATTAAAAAAATTCAAAGAAAAAGAAGGATACACATTGGTTCCTATATCGATATA TCTCAAAAATTCGTTAATAAAGGTCGAACTTGGAATATGTAAAGGAAAAAAACTGTTTGACAAAAGAGAAATTTTAAAAC AAAAAAGTATCAAAAAAGATCTCAGTCGTGAAATCAAACAATATAAATAA Protein sequence : MSSILLENKKARFNYFIEDRLSCGIVLKGTEVKSIKLKKFTFNDSFANIKKDEIWLENLHIAKYKEGNIFNHEETRRRKL LITKKEIQKLKKFKEKEGYTLVPISIYLKNSLIKVELGICKGKKLFDKREILKQKSIKKDLSREIKQYK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-25 | 50 |
