Gene Information

Name : Lferr_0608 (Lferr_0608)
Accession : YP_002219069.1
Strain : Acidithiobacillus ferrooxidans ATCC 53993
Genome accession: NC_011206
Putative virulence/resistance : Virulence
Product : two component sigma-54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 565578 - 566963 bp
Length : 1386 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mfa:Mfla_1055 two component, sigma54 specific, transcri

DNA sequence : 
ATGCCCAGACCAGCTCCCATCATCCTGACCATCGACGATGATCCCGACTTTCTGCGCCTGCTCGGCCTCTGGCTGGAAAG
TGAGGGATACCACGTCCTGGCCAGCAGTGATCCCGTGCAGGGCATGCAGACGTTGCAGACGGCCAGACCGGATCTGGTCA
TCACCGATCTGCGCATGCCCGGCATGGATGGAATGGCCGTGCTGGAGACGGTGCAGGCCCTCGATCCCGACCTCCCCGTT
ATCCTCCTCACCGCCCACGGCAGCATCCCCAACGCCGTGGCAGCCATGCGTGCCCAGGCTTTCGGATATCTGAGCAAACC
CTTCAGCAATGAAGAGCTCCAGGAGTTGACCACCGCCGCCCTGGCGCAGCGCCACGCCGGGCAGGAAACCCGCAAGCTCC
GGGCGGCGTTGCGGCAACAGGCCGGGCAGAGCATCCTCCATCGTAGCCCCGCCATGGCGGCGCTGGTGGATGAGCTGGCG
TGCGTTGCCAACTCGAAAGCCAGCGTTTTCCTTTCCGGAGAAAGCGGATCCGGCAAAGAACGGGTCGCTCGTGCCATCCA
CGACGCCAGCCCACGCCGTGACGGCCCGTTCGTTGCGGTCAATTGCGGTGCCATCCCCGCCGGGCTGGCGGAGAGCGAAC
TCTTCGGCCATGTCAAGGGCGCCTTCACCGGCGCCACCCAGGATCACACCGGATTGATCCGCAGCGCCAGCGGCGGCACT
CTGTTCCTCGACGAAATCGCCGACCTGCCTCTCACTCTGCAGGTCAAATTGCTCCGCGTCCTTCAGGAAGGTTCCTTGCG
CCCCGTCGGCGCCAAAACGGAAATTTCCGTCGACCTGCGGGTCATCAGTGCCACCCATCAGGACATTCACGCCCTCACCG
CCGACGGCACCTTCCGCGAGGATCTTTACTATCGCCTGCATGTCATCCCGCTGCGGGTCCCCAGCCTGAGCGAAAGGGCG
GAAGACATCCCGCTGCTGGCCCAGCACTTTCTGGACCGCGAGAGTCAGCGCATGAACCGGGATATCCTGGGTTTCAGTCC
CGAGGCCCTCGACAAGCTGATGCAACGATCCTGGCCCGGCAACGTCCGGGAATTGGAGAATGCCGTCACCTTTGCCGCGG
CCGTCACCGAAAAAGGCTGGGTCGCCGCCGACGCCATCCCTGACAACGGCCGCCAGGGTGGCCAGAGCGCCTTTCCTCCC
CTGCAGGACGCCAAGGCGGCCTTTGAGCGCGGCTACCTGGAAAACCTGCTACGCGCGACGGATGGCAACATCTCCCGTGC
CGCACGCATTGCCGGCCGACACCGGACGGATCTTTACAAGCTGATGCGTAAGCACAGTCTGGCTCCGCAACTTTTCAAGA
ATCCCGAGGACCGGGATGAGGAATAG

Protein sequence : 
MPRPAPIILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMPGMDGMAVLETVQALDPDLPV
ILLTAHGSIPNAVAAMRAQAFGYLSKPFSNEELQELTTAALAQRHAGQETRKLRAALRQQAGQSILHRSPAMAALVDELA
CVANSKASVFLSGESGSGKERVARAIHDASPRRDGPFVAVNCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGT
LFLDEIADLPLTLQVKLLRVLQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFREDLYYRLHVIPLRVPSLSERA
EDIPLLAQHFLDRESQRMNRDILGFSPEALDKLMQRSWPGNVRELENAVTFAAAVTEKGWVAADAIPDNGRQGGQSAFPP
LQDAKAAFERGYLENLLRATDGNISRAARIAGRHRTDLYKLMRKHSLAPQLFKNPEDRDEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 7e-64 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 7e-64 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lferr_0608 YP_002219069.1 two component sigma-54 specific Fis family transcriptional regulator BAC0467 Protein 4e-72 47
Lferr_0608 YP_002219069.1 two component sigma-54 specific Fis family transcriptional regulator BAC0089 Protein 3e-90 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lferr_0608 YP_002219069.1 two component sigma-54 specific Fis family transcriptional regulator VFG1249 Protein 6e-61 44
Lferr_0608 YP_002219069.1 two component sigma-54 specific Fis family transcriptional regulator VFG1214 Protein 2e-71 42