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Name : Lferr_2413 (Lferr_2413) Accession : YP_002220816.1 Strain : Acidithiobacillus ferrooxidans ATCC 53993 Genome accession: NC_011206 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2379805 - 2382873 bp Length : 3069 bp Strand : - Note : KEGG: rrs:RoseRS_0281 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases DNA sequence : ATGACCCCCCTCAACGAATCCACCATCGAACACCACGCCATTGCCCTATTCAAAGAACTGGGCTACGCCTACGCATTCGG CCCCGACATCGGCCCGGATAGCAACCAAAAAGAACGCGCTGACTACGAAAACCCCCTGTTACTGGAACGCCTGCGTACAG CCATCCATCGCCTGAATCCAGAAGCCCCCAAGGAAATCCGCGACGAAGCCCTACGCCATGTGCAGGCTATTGCCGTGGGT GGACTGATGACCGAGAACAGCCTATTTCAGCAGATGCTCGTGGAAGGGGTACGGGTGGCGCACATGGTGGACGGCGAAGA ACGCGGCAGCATCGTCCGCCTGATCGACTACGACCATCCTGAAAAGAATGATTTGCTGGTGGTCAACCAGTACACCGTCA TCCACAACCGCATCAACCGCCGCGCCGATCTAGTGGTTTTCGTGAATGGCCTGCCCTTGGGCCTCTTTGAACTGAAAAAC ATGGCGGACGCCAACGCCACCACCCGCCGGGCATGGAATCAACTACAGACCTATCAGGCCGACATTCCCAACCTCATGGC CTACAACGCCATACTGGTCATCAGCGATGGGCTGAAGGCCGCCGTAGGCTGTCTGGGTGCCCCTTATGAACGCTTTCTGC CCTGGAAAACCATCGACGGTCAGGAACTCATGGACCGGGGGGATGACCCTTTACGTTTCCTGATTCACGGGGTTTTTGAA CCCGTCCGTTTTCTGGACTTGATCCGCTATTTCATCGCCATTAGTGACGATGGCCGCAAACTCAGCAAGAAGATCGCCGC CTATCATCAGTTCCACGCCGCCCAGAAGGCCCTGCTGACCACCCTGGCATCGGCAGGCATCGGTGGTGATCGCCGGGGTG GTGTGGTCTGGCATACCCAGGGGTCCGGCAAGAGCCTCACCATGCTCTTTTTCGCGGGCATGCTCATCCAGCACCCGGCG CTGGAAAACCCCACCATCCTCATGCTCACCGACCGCACGAACCTGGACACCCAGTTGTTCGATACCTTTGCCGCAGGCAA GCAGCTTTTACGGCAAGACCCGCAGCAGGCCGACAGCGTCAGTGATCTTCGGGAACTGCTGCAACGGGCTTCCGGCGGTG TACTGTTCAGCACCATCCAGAAATTCCAGAAAGACCGCGACGAACCTTTGGGCAAGCACCCGGTATTGTCCGAGCGGAAG AACATCATCGTCATGGTGGATGAAGCCCAGCGTAGCCAGTATGAGATTCTGAAGGGATATGCCGCCAATCTGCGGGCGGC CTTGCCCAACGCGACCTTCGTGGCCTTCACCGGCACACCGCTGGAACTGGATGACCGGGACACGCGGGTGGTGTTCGGCG ATTACATCGACATCTACGATATTCAGCGGGCCGTCGAGGATGGGGCCACCGTCCCGATTTATTACGAAAGCCGCCTGGTG CGCCTCAACCTGCCGGAAGACCAGCGCCCCCTCATCGACAGCACCTTTGAGGAAATCACCGAAGACGACGAGCAGGAAAA CAAGGAACGCCTGAAAACCCGCTGGGCGCAACTGGAAGCCCTGGTCGGCGCCCCCAAGCGAGTGGAACAGATTGCCGCTG ACCTGCTGGACCATTGGGAAAAGCGCAAGAGCATCCTGTCCGGCAAGGCCATGATCGTCGCCATGAGCCGTCGCATTGCC GTGGAACTTTATGATGCCATCGTCCGTATCCATCCCGACTGGCGCGGTGACGACGACACGCAAGGCCGGATCAAGGTGGT CATGACCGGTTCCGCCAGCGACCCCATCGAATGGAAGCCGCATATCCGCAGCAAGGCGGGCAATGAAGCCATTGCCGACC GCCTGAAAGACCCGGATGATCCGTTAGAAATCGTCATCGTGCGGGATATGTGGCTGACGGGCTTCGACGCCCCGGCCCTG AATACGCTCTATGTGGACAAACCCATGCGCGGGCACACCCTCATGCAGGCCATCGCCCGCGTCAACCGGGTCTTCACCAA CAAGTCCGGTGGACTGGTGGTGGATTACATCGGCATTGCCCAGGACCTGAAAAACGCCATTGCCACCTACACCCGTTCCG GTGGCAAGGGCAATCCGGCGGAAACCGTGCAGACCGCCATCAAGGTGCTGCTGGAAAAACTCGACATCTGCCGCGGTATT TTCCATGGCTGTGACTATCAGGATTATCTGACTGACGACGGATCAGAAAAGGTGGCCACCCTGCGCAAGGCCACCGAATT CATTCTGTCTCAGGAACTCACCGAAGAAGGCGTCAAGCGCCGTTTCCGCAACGCCACGTCCGGCCTCAAAAAAGCGGCGA CTTTAGCCGCCGGCGACGACATTGTGGAACGCTGCCGGACTGAGATCATTTTCTTCCTGAGCGTCCGTGCCACTCTGGAC AAGTCCAGCGAGGCCGAGTCTCTGGTGGAAGAACAGGAATACGCCATCCGCCAACTTATCGACCAATCCATCGCCCCGGA AGGCGTGGTGGACCTGTATGCGGTGGCGGGGCTACCCAAAAGCGAAATATCCCTGCTGTCCGATGAATTCATCCACCAGA TCGAGGCTATGCCCGAAAAGAATCTGGCGCTGGAAATGCTGCGTCGATTACTGCAGGACAAGGTCCGCAAGGAAGGCAAG GGCAACCTGATCCAGAGCAAAGCCTTCTCGGAAAAGCTGGAAGAAGCCCTGCGCAAATACCACAACCGTTCGGTGGATAC CGTCGAGGTGATGCAGGAACTCATCGAACTGGCCAAAGCATTACAGGCGCTGGATCAACGCCATGCGGAACTGGGCCTCA GCAAGGACGAGGCCGCCTTTTATGATGCCCTGGCGACCAACGATTCCGCCGTGCAGGCCATGGGGGACGAGGCCCTGAAA ATGATCGCCAAGGAAGTGGCCGATACTGTGCGCCAAAACACCCGCATCGACTGGTCCATCCGGGAACAGGCAAGGGCGCA TCTGCGGCGCATGGTGAAGCGGGTGCTACGCAAACACGGCTATCCACCCGACATGCAGGAAGGGGCGGTGAATCTGGTCA TTGAACAGGCTGAGGGGTTGGTGGGGTGA Protein sequence : MTPLNESTIEHHAIALFKELGYAYAFGPDIGPDSNQKERADYENPLLLERLRTAIHRLNPEAPKEIRDEALRHVQAIAVG GLMTENSLFQQMLVEGVRVAHMVDGEERGSIVRLIDYDHPEKNDLLVVNQYTVIHNRINRRADLVVFVNGLPLGLFELKN MADANATTRRAWNQLQTYQADIPNLMAYNAILVISDGLKAAVGCLGAPYERFLPWKTIDGQELMDRGDDPLRFLIHGVFE PVRFLDLIRYFIAISDDGRKLSKKIAAYHQFHAAQKALLTTLASAGIGGDRRGGVVWHTQGSGKSLTMLFFAGMLIQHPA LENPTILMLTDRTNLDTQLFDTFAAGKQLLRQDPQQADSVSDLRELLQRASGGVLFSTIQKFQKDRDEPLGKHPVLSERK NIIVMVDEAQRSQYEILKGYAANLRAALPNATFVAFTGTPLELDDRDTRVVFGDYIDIYDIQRAVEDGATVPIYYESRLV RLNLPEDQRPLIDSTFEEITEDDEQENKERLKTRWAQLEALVGAPKRVEQIAADLLDHWEKRKSILSGKAMIVAMSRRIA VELYDAIVRIHPDWRGDDDTQGRIKVVMTGSASDPIEWKPHIRSKAGNEAIADRLKDPDDPLEIVIVRDMWLTGFDAPAL NTLYVDKPMRGHTLMQAIARVNRVFTNKSGGLVVDYIGIAQDLKNAIATYTRSGGKGNPAETVQTAIKVLLEKLDICRGI FHGCDYQDYLTDDGSEKVATLRKATEFILSQELTEEGVKRRFRNATSGLKKAATLAAGDDIVERCRTEIIFFLSVRATLD KSSEAESLVEEQEYAIRQLIDQSIAPEGVVDLYAVAGLPKSEISLLSDEFIHQIEAMPEKNLALEMLRRLLQDKVRKEGK GNLIQSKAFSEKLEEALRKYHNRSVDTVEVMQELIELAKALQALDQRHAELGLSKDEAAFYDALATNDSAVQAMGDEALK MIAKEVADTVRQNTRIDWSIREQARAHLRRMVKRVLRKHGYPPDMQEGAVNLVIEQAEGLVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 45 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 44 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 44 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 44 |
