Gene Information

Name : Lferr_2066 (Lferr_2066)
Accession : YP_002220487.1
Strain : Acidithiobacillus ferrooxidans ATCC 53993
Genome accession: NC_011206
Putative virulence/resistance : Resistance
Product : copper-translocating P-type ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : -
Position : 2068441 - 2070465 bp
Length : 2025 bp
Strand : +
Note : TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: tbd:Tbd

DNA sequence :
ATGGACCATTCGGGACATCAGGAACATGGGATGGGTAACGCTCATCCCGGCGCGCACGGCGGTCACAACCATGGTGCCAT
GATCGCCGATTTCCGGCGACGGTTTTGGGTATCGCTGGCCCTGACGATCCCTATCCTCCTTTTGTCGCCGCTTATCCAGC
GGCTGCTGGGGCTGGAGGCGGCGCTCGCCTTCACAGGGTCATCCTATGTGCTTTTCGCGTTGTCGAGTGGAGTGTATTTC
TACGGCGGCTGGCCCTTCCTGAAGGGACTGTTTGCCGAGCTCGAGACCCGCAAGCCAGCCATGATGACGCTGATCGCTCT
GGCCATCAGCGTGGCCTATTTTTACTCGAGCGCCGTCGTGTTCGGGGTGCAGGGGGAAGTGTTCTTCTGGGAGCTCGCCA
CGCTGATCGATGTGATGCTGCTCGGCCACTGGATCGAGATGAAATCAGTCCTGGGGGCTTCTGGTGCACTGGAAAAACTG
GTGCAAATGATGCCATCCGAGGCCCATCTCGTAACCCCGGAGGGCATGAAAGACGTGCCGGTCGCCAATCTGCAGCGCGG
TGACCGGGTGTTGGTGAAGCCCGGCGAAAAAATCCCTACGGACGGACGTGTCATCGAGGGACGGACCACCATCAACCAGG
CCATGCTCACCGGCGAAAGCCAGCCCGTGGAGAAGGGGGACGGCGACGAAGTGATCGGTGGTTCGGTTAACGGGGAGTCG
AGTATCACCGTCGAGGTCCACAAGACCGGCAGTGAAACCTATCTTTCACAGGTCATCGAGATGGTGCGCCGGGCACAGGA
GTCCCGCTCCCGGACCCAGGACCTGGCCGACCGCGCGGCCCTGGTGCTGACCCTTACCGCGTTGAGCGTCGGCGGACTTA
CCCTTGCCATTTGGCTGGTCCTTGGCCAGCACTTCGAGTTTGCCCTGGCCCGCATGGTCACCGTTATGGTGATTGCCTGT
CCCCATGCCCTAGGCCTGGCGATTCCGCTGGTCGTCGCCGTGTCCACCGCCCTGGCGGCACAGCATGGGCTGCTTATCCG
GGACCGGTCTGCTTTTGAACGGGCGCGCCAACTGCAGGCGGTGGTGTTCGACAAGACCGGGACCTTGACGGAGGGACGGT
TCGGCGTCACGGATGTGGCCGTGCTGGGCGGATACGCCGAAGATGAGGTCGTGCGGCTCGCCGCAGCCCTCGAAAGTCAG
TCGGAGCACCCCATCGCCGCCGGCATCGTGGCATATGCCAAAGCGAAGGGCATCGGCTTCGAGCCTCCCAAGGAATTCAA
GGCCATCCCCGGCAAGGGTGCGCAAGCCGTTGTAAATGGGCGCAATGTGAAGGTCGTAAGCCCCGGCTATCTCAAGGAGA
GCGGTCTCGATGTCAGCGATGAGCGGATCGCGGCCTTGGCATCCCAGGGCAAAACGGTGATATACCTGCTCGTCGACGAG
AAACCGGCGGGGGCTGTCGCGCTGGCCGACATCATTCGAGCGGAGTCGCGGGAAGCCCTCGCGCGGCTGAAGGGGATGGG
CGTACAGGTGATGATGTTGACCGGCGACTCCGCAGCGGTGGCCCGTTGGGTGGCCCAGGAAATGGGGCTGGACGACTATT
TCGCCGAAGTGCTCCCTGGACAAAAGGCGGAGAAGATCAAGGAGGTAAAGGCGCGGGGATTGCGCGTGGCCATGGTCGGC
GACGGCGTCAACGATGCGCCTGCCCTAGTGGAGGCGGATGTCGGGATCGCCATCGGGGCGGGCACGGACGTCGCCATCGA
GTCGGCGGACATTGTGCTGGTCCGCTCCGATCCCCGGGATGTGGCGGCTATCCTGGAACTTTCCCGGGCGACCTATCGCA
AGATGATCCAGAACCTGTGGTGGGGTGCCGGCTACAACATCGTGGCGATCCCCCTTGCTGCCGGGGTGGCTTACAGCGTT
GGCCTGGTGCTTTCCCCGGCGGTGGGGGCGGCCCTGATGTCCATTTCCACCGTGATCGTCGCCATCAACGCCAAGCTCCT
CCAGAGGGTTCGGCTCACCGCCTAG

Protein sequence :
MDHSGHQEHGMGNAHPGAHGGHNHGAMIADFRRRFWVSLALTIPILLLSPLIQRLLGLEAALAFTGSSYVLFALSSGVYF
YGGWPFLKGLFAELETRKPAMMTLIALAISVAYFYSSAVVFGVQGEVFFWELATLIDVMLLGHWIEMKSVLGASGALEKL
VQMMPSEAHLVTPEGMKDVPVANLQRGDRVLVKPGEKIPTDGRVIEGRTTINQAMLTGESQPVEKGDGDEVIGGSVNGES
SITVEVHKTGSETYLSQVIEMVRRAQESRSRTQDLADRAALVLTLTALSVGGLTLAIWLVLGQHFEFALARMVTVMVIAC
PHALGLAIPLVVAVSTALAAQHGLLIRDRSAFERARQLQAVVFDKTGTLTEGRFGVTDVAVLGGYAEDEVVRLAAALESQ
SEHPIAAGIVAYAKAKGIGFEPPKEFKAIPGKGAQAVVNGRNVKVVSPGYLKESGLDVSDERIAALASQGKTVIYLLVDE
KPAGAVALADIIRAESREALARLKGMGVQVMMLTGDSAAVARWVAQEMGLDDYFAEVLPGQKAEKIKEVKARGLRVAMVG
DGVNDAPALVEADVGIAIGAGTDVAIESADIVLVRSDPRDVAAILELSRATYRKMIQNLWWGAGYNIVAIPLAAGVAYSV
GLVLSPAVGAALMSISTVIVAINAKLLQRVRLTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 1e-106 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lferr_2066 YP_002220487.1 copper-translocating P-type ATPase BAC0629 Protein 0.0 68
Lferr_2066 YP_002220487.1 copper-translocating P-type ATPase BAC0079 Protein 1e-133 47
Lferr_2066 YP_002220487.1 copper-translocating P-type ATPase BAC0383 Protein 1e-104 45
Lferr_2066 YP_002220487.1 copper-translocating P-type ATPase BAC0101 Protein 3e-86 42