Gene Information

Name : Lferr_0167 (Lferr_0167)
Accession : YP_002218634.1
Strain : Acidithiobacillus ferrooxidans ATCC 53993
Genome accession: NC_011206
Putative virulence/resistance : Resistance
Product : copper-translocating P-type ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : -
Position : 155529 - 157553 bp
Length : 2025 bp
Strand : -
Note : TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: tbd:Tbd

DNA sequence :
ATGGACCATTCGGGACATCAGAAACAAGGGATGGGTACCGCTCATTCCAGTGCGCACGGCGGTCACAACCATGCCGCCAT
GATCGCCGATTTCCGGCGGCGGTTTTGGGTGTCACTGGCACTGACGATCCCTATCCTTTTTTTGTCGCCGCTTATCCAGC
ATCTGCTGGGACTGGAGGCTACTCTTGCCTTTACGGGGTCGTCCTATGTGCTTTTCGCACTATCGAGCGGGGTTTATTTC
TACGGCGGCTGGTCCTTCCTGAAAGGACTATTTTCCGAGCTCAAAACCCGCAAGCCAGCCATGATGACGCTGATCGCCCT
GGCCATCAGCGTGGCCTATTTTTACTCGAGTGCCGTCGTGTTCGGGGTTCAAGGCGAAGTGTTCTTCTGGGAACTCGCTA
CGCTGATCGATGTGATGTTGCTCGGCCACTGGATCGAGATGAAATCGGTCATGGGGGCTTCCGGCGCACTGGAAAAACTG
GTGCAAATGATGCCTTCCGAGGCCCATCTCGTGGCCCCGGACGGTATGAAAGACGTGCCGGTCGCCAATCTGCAGCGCGG
TGACCGGGTGCTGGTGAAGCCCGGCGAAAAAATCCCTACAGATGGTCTGATCGTCGATGGGCGAACCACCGTCAACCAGG
CTATGCTCACTGGCGAAAGTCGGCCCGTAGAGAAGGGCAGCGGTGACGAAGTTATCGGTGGTTCGGTCAACGGGGAGTCA
AGTATCACCGTCAAGGTCCACAAGACCGGCAGTGAAACCTATCTTTCACAGGTCATCGAGATGGTGCGCCGGGCACAGGA
GTCCCGCTCCCGGACCCAGGACTTGGCCGACCGTGCGGCCCTGATGCTGACCCTTACCGCGTTGAGTGTCGGGGGGCTTA
CCCTTGCCACTTGGCTGGTCATTGGCCAGCACTTCGAGTTTGCCCTGGCCCGCATGGTCACAGTTATGGTGATTGCCTGT
CCCCATGCTCTGGGCCTAGCGATTCCGCTGGTCGTCGCCGTGTCCACCGCCATGGCGGCGCAGCATGGGCTGCTTATCCG
GGACCGGTCTGCTTTTGAGCGGGCGCGCCAACTGCAGGCGGTGGTGTTCGACAAGACCGGGACCTTGACGGAGGGGCGGT
TCGGCGTCACGGATGTGGTCGTGCTGGGCGGATATGCCGAAGATGAGGTCGTGCGGTTCGCCGCAGCCCTCGAAAGCCAG
TCGGAGCACCCCATCGCCGCCGGCATCGTGGCAGATGCCAAAGAGAGGGGCATAAGCTTCGAGCCTCCCAAGGAATTCAA
GGCCATCCCCGGCAAGGGCGCACAAGCCATCGTGGAAGGACGCAACGTGAAGGTCGTGAGCCCCGGCTATCTCAAGGAGT
ATGGCCTCGATGCCAGCGATGAGCGGATCGGAGCCTTGGCATCCCAGGGCAAAACGGTGGTATACCTGCTCGTCGACGAG
AAAGCGGCAGGGGCGGTCGCGCTGGCCGATATCATTCGAGCAGAGTCGCGGGAAGCCCTCGCACGGCTGAAGGGGATGGG
CGTACAGGTGATGATACTGACCGGGGACTCGGAAGCGGTGGCCCGCTGGGTGGCCCAGGAAATGGGGCTTGACGATTATT
TCGCCGAAGTGCTGCCGGATCAAAAGGCGGAGAAGATCAAGGCAGTGCAGGCGCGGGGGTTGCGCGTGGCCATGGTTGGC
GACGGTGTCAACGATGCGCCCGCCCTAGTGGAGGCGGACGTCGGGATCGCCATCGGGGCAGGCACGGACGTCGCCATCGA
GTCGGCGGACATCGTGCTGGTCCGCTCCGATCCCCGGGACGTGGTGGCCATCCTGGAACTTTCCCGCGCCACCTATCGCA
AGATGGTCCAGAACCTGTGGTGGGGCGCCGGCTACAACATCGTGGCGATCCCCCTTGCTGCCGGAGTGGCTTATAGCATT
GGCCTGGTGCTTTCCCCGGCGGTGGGGGCGGCCCTGATGTCCGTTTCCACCGTGATCGTCGCCGTCAACGCCAAGCTCCT
TCAGAGGGTTCGGCTCACCGCCTAG

Protein sequence :
MDHSGHQKQGMGTAHSSAHGGHNHAAMIADFRRRFWVSLALTIPILFLSPLIQHLLGLEATLAFTGSSYVLFALSSGVYF
YGGWSFLKGLFSELKTRKPAMMTLIALAISVAYFYSSAVVFGVQGEVFFWELATLIDVMLLGHWIEMKSVMGASGALEKL
VQMMPSEAHLVAPDGMKDVPVANLQRGDRVLVKPGEKIPTDGLIVDGRTTVNQAMLTGESRPVEKGSGDEVIGGSVNGES
SITVKVHKTGSETYLSQVIEMVRRAQESRSRTQDLADRAALMLTLTALSVGGLTLATWLVIGQHFEFALARMVTVMVIAC
PHALGLAIPLVVAVSTAMAAQHGLLIRDRSAFERARQLQAVVFDKTGTLTEGRFGVTDVVVLGGYAEDEVVRFAAALESQ
SEHPIAAGIVADAKERGISFEPPKEFKAIPGKGAQAIVEGRNVKVVSPGYLKEYGLDASDERIGALASQGKTVVYLLVDE
KAAGAVALADIIRAESREALARLKGMGVQVMILTGDSEAVARWVAQEMGLDDYFAEVLPDQKAEKIKAVQARGLRVAMVG
DGVNDAPALVEADVGIAIGAGTDVAIESADIVLVRSDPRDVVAILELSRATYRKMVQNLWWGAGYNIVAIPLAAGVAYSI
GLVLSPAVGAALMSVSTVIVAVNAKLLQRVRLTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 1e-110 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lferr_0167 YP_002218634.1 copper-translocating P-type ATPase BAC0629 Protein 0.0 67
Lferr_0167 YP_002218634.1 copper-translocating P-type ATPase BAC0079 Protein 3e-145 47
Lferr_0167 YP_002218634.1 copper-translocating P-type ATPase BAC0383 Protein 1e-110 43
Lferr_0167 YP_002218634.1 copper-translocating P-type ATPase BAC0101 Protein 9e-93 42