Gene Information

Name : Lferr_1426 (Lferr_1426)
Accession : YP_002219865.1
Strain : Acidithiobacillus ferrooxidans ATCC 53993
Genome accession: NC_011206
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1382782 - 1383696 bp
Length : 915 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: bmu:Bmul_5725 integrase catalytic region

DNA sequence : 
ATGAACACCTTTGTCGATACGCATCGTGATGTTTTTGGGGTCGAGCCGATCTGCCGTGTCTTGCAGATCGCCCCGTCGGG
CTACCGGCTTCATGCCACACGCCAGCGCAATCCCGCGCTGCGTTGTGCGCGTGCGCAACGCGACGATGTATTGATACCCA
AGATCGAACGCGTCTGGCAGGCCAATCTTCAGGTCTACGGCGCGGACAAGGTCTGGCGGCAGATGAAGCGCGAAGGCACC
GAGGTCGCGCGCTGCACCGTCGAGCGCCTGATGAACCGCCTGGGATTGCGCGGCGCGGTGCGGGGTAAAAGCGTGCGCAC
GACGGTACCCGACTCCAAACAACCGTGCCCGCTGGATCGGGTAAACCGCCAGTTCAAGGCGGATCGGCCGAACCAGCTCT
GGGTTTCGGATTTCACCTATGTTTCGACCTGGCAGGGCTGGCTGTATGTGGCCTTCGTGATCGACGTGTTCGCCCGGCGC
ATCGTTGGCTGGCGAGTGAGTCGAAGCATGACGACGGACTTCGTGCTGGACGCACTGGAGCAGGCGCTCTACGCCCGTCA
GCCCGAATGCGATGGCAGCCTCGTGCATCACTCTGACCGGGGCTCGCAGTACGTCAGCATCCGCTACAGCGAGCGTCTCG
CCGAAGCGGGTGTTGAACCCTCCGTGGGCAGCAAGGGCGACAGCTATGACAACGCCCTGGCCGAGACGATCAATGGGCTG
TACAAGGCGGAACTAATTCACAGGCGCGGCCCGTGGAGGACACGGGAAGCGGTGGAACTGGCGACCCTCGAATGGGTGGC
GTGGTTCAACCATGTCAGGCTGCTCGAACCCATCGGCTATATCCCTCCGGCAGAAGCTGAGGCAAACTACTATCGGCAAC
TCGCCGAACAGACCGAATTAACGGCCTGCACTTAA

Protein sequence : 
MNTFVDTHRDVFGVEPICRVLQIAPSGYRLHATRQRNPALRCARAQRDDVLIPKIERVWQANLQVYGADKVWRQMKREGT
EVARCTVERLMNRLGLRGAVRGKSVRTTVPDSKQPCPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARR
IVGWRVSRSMTTDFVLDALEQALYARQPECDGSLVHHSDRGSQYVSIRYSERLAEAGVEPSVGSKGDSYDNALAETINGL
YKAELIHRRGPWRTREAVELATLEWVAWFNHVRLLEPIGYIPPAEAEANYYRQLAEQTELTACT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 9e-62 65
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 7e-62 65
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-69 65
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 5e-76 61
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 5e-76 61
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 5e-76 61
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-76 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-75 61
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-78 61
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-78 61
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 7e-79 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 9e-79 61
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-77 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-77 61
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-78 60
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-78 60
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-78 60
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-54 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 5e-77 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 5e-77 60
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-75 59
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 9e-54 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-40 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lferr_1426 YP_002219865.1 integrase catalytic subunit VFG1602 Protein 2e-75 59