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Name : Lferr_1425 (Lferr_1425) Accession : YP_002219864.1 Strain : Acidithiobacillus ferrooxidans ATCC 53993 Genome accession: NC_011206 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 1380612 - 1382663 bp Length : 2052 bp Strand : - Note : KEGG: eba:p2B17 TraE protein (DNA topoisomerase); TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain pro DNA sequence : ATGAAACTATACATCGCCGAGAAGCCCAGCCTGGGCAAAGGGATCGCCGAGTATTTGCCCGGATCGAAGAGCAAAGGGAA TGGCTTCATCCAGTGCGGAGTGGATATCGCCGTGACCTGGTGTTTCGGCCATATATTCGAGCAGGAAGAGCCGGACTTCT ATACGCCTGATGATGTTCCCACCACGCCAAAGGGCAAGAAGAAATGGCGATTTGAGGAACTGCCCATATTTCCTGAGCAA TGGAAGAAGCGGGCGAAGGATGACGCCAAGGCCCAGATCAAGGTGATCCGGGACCTGCTCAAGAAAGCCTCGTCTGTCGT CAATGCCGGCGACCCGGACCGAGAGGGTCAGCTGCTGGTGGATGAGGTCCTGGAGGAACTCCGCTGGAAAGGACCAACCC TGAGGATCTGGCTGGCCGCCCTCGATGAGCAGTCCGTGCGTAAGGCGCTGGCATCGCTCAAGGATAACCAGGACTACCAG AATCTCCGAAACTCAGCCGAAGCCCGTGCCCGCGCGGACTGGCTCATGGGCATGAATCTCACCCGTGCTTTCACCCTGCG CAACAGCGGCGCTGGGGTCGTCTCCGTGGGTCGGGTGCAGACGCCGACCTTGGCTCTGGTCGTGGCCCGTGATGAGAAGA TCGAGCACTTCAAGCCGAAGGACTACTACGTTCCGCGCATCAACGCGGGCTTCTGGGCCACCTGGGAGTTGCGGGAGGAT TTCGAGGGGGTCGATGCCGAAGGGTATCTCACCGACGGGAAAGCCGCTGACCGGCTGGTATCCCGGGCCAAGGCGGAAGG CAAGGCGACGGTGAAGGACTTCACCAGCGTGGAAAAGCAGCAGCAGGCCCCATTAGGCTTCTCCCTTGCAGAGTTACAAA AGGTCTGCTCCGCCAAGCTCGGCATGTCGGCACAAAATGTCCTTGATGCGGCCCAGGCGCTGTACGAGGAGCACAAGGCG GCGACCTATCCCCGGACCGATTGCCGCTATCTACCGGAAGAACAGCATGGGGATGCCGGACAGATACTGTCCGGCCTAGC AAAAGCCGGATTTGCGAATCTGGTGAAAGCCGCCGATTCTAACCGAAAGTCGGCCATCTGGAATACGGGCAAAGTGACGG CGCACCACGCCATCATTCCGACCGGCTCCATGCAGGGCACTATGAGCCCCGCAGTGGCCAAAGTCTACGAGATCATCGTC CGCTCCTATCTCGCGCAGTTCTATCCGCCCTATGTGTACCGGGCGATCAAGGCCCTACTGACTTGCACCGGCGAGGACTG GAAGGCGACTGCCAACATCCCGGTCTCCGCAGGCTGGAAAGCCGTGTATGGGATGACCGATGACGATAATGATGACACCC CCGCCCAGCCGATCCCGGCGCTCAAAAAAGGCCAGGTTCTGACCGTCCAGGATGCAGATGTCCAGGCAAAACAGACCAAG CCGCCGGCACGATTTACGGATGGGTCGCTCATCGAGGCCATGAGCAACATCCATAAGGTGGTGGAGGATGAGGCCGCCAA GGCCAAACTCAAGGAAACCTCTGGCCTGGGGACTGAGGCCACCAGGGCTAGCATCATCGAAACACTGCTCACCCGGGGAT TCATGGAGCGCAAAGGCAAGCAGATCCTCTCCACCCAGGCAGGGCGGGCGCTGGTTCACGCGCTGCCCAAAGACCTCACG GATCCCGTCCTGACGGCACGCTGCGAAGATGCCCTGTCATCCGTGTCTGAGGGCCGCGTGACGCTACAGCAGTTCGAGGA AGCCCAGCGCAAATTCGTTTCTCGCATGATCGAAGCAGCCAAGGCAGCGACCATCGCCGTTGGGCAAGCGCGGTCCGCCA CGAGCGCGCGGGGTAAGGCGTCTACCAGAAAAACGCGGGGCGGCGGACAAAAGGCTGGCCCCGCCTGCCCGGACTGCAAA AAACCGACCATTACCCTGAAGACCAAGAAAGGCGACGCCTTTTTCAAGTGCGAGGGCTGCCAGTCCTGCTGGTGGCCGGA CAAGCAGGATGCCAAGAAGGTCGGAACGAAGTGGAGCGAGAAAAAAACATGA Protein sequence : MKLYIAEKPSLGKGIAEYLPGSKSKGNGFIQCGVDIAVTWCFGHIFEQEEPDFYTPDDVPTTPKGKKKWRFEELPIFPEQ WKKRAKDDAKAQIKVIRDLLKKASSVVNAGDPDREGQLLVDEVLEELRWKGPTLRIWLAALDEQSVRKALASLKDNQDYQ NLRNSAEARARADWLMGMNLTRAFTLRNSGAGVVSVGRVQTPTLALVVARDEKIEHFKPKDYYVPRINAGFWATWELRED FEGVDAEGYLTDGKAADRLVSRAKAEGKATVKDFTSVEKQQQAPLGFSLAELQKVCSAKLGMSAQNVLDAAQALYEEHKA ATYPRTDCRYLPEEQHGDAGQILSGLAKAGFANLVKAADSNRKSAIWNTGKVTAHHAIIPTGSMQGTMSPAVAKVYEIIV RSYLAQFYPPYVYRAIKALLTCTGEDWKATANIPVSAGWKAVYGMTDDDNDDTPAQPIPALKKGQVLTVQDADVQAKQTK PPARFTDGSLIEAMSNIHKVVEDEAAKAKLKETSGLGTEATRASIIETLLTRGFMERKGKQILSTQAGRALVHALPKDLT DPVLTARCEDALSSVSEGRVTLQQFEEAQRKFVSRMIEAAKAATIAVGQARSATSARGKASTRKTRGGGQKAGPACPDCK KPTITLKTKKGDAFFKCEGCQSCWWPDKQDAKKVGTKWSEKKT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-105 | 41 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 3e-105 | 41 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-105 | 41 |
