Gene Information

Name : SeD_A0701 (SeD_A0701)
Accession : YP_002214597.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : IbrB protein
Function : -
COG functional category : K : Transcription
COG ID : COG1475
EC number : -
Position : 703470 - 704087 bp
Length : 618 bp
Strand : -
Note : identified by match to protein family HMM PF02195

DNA sequence :
ATGCAACACCGACTCACAACCGAAATAACTCACTTTCTCTCTGAACTGCCTGAAGAGGAGAGGATCGCCGCCATTAATGA
ATTTAGAATGGCGATACATAGCGTTAGTCCTTTTCGCGATGAGCCTGTCGATTGTGTCCTGTGGGTGAAAAACGATCATA
TTTCACCTAATGACTACAACCCGAATAACGTTGCGCCGCCGGAGAAAAAACTGCTGCTTAAATCGATTGAACAAGATGGG
TTTACTCAGCCGATCGTGGTGGTAAAGGCCAATACGGAGGAGTACGAGATTGTAGACGGTTTTCACCGTCATGAGCTGGG
CAAAGGAAAAGCGGCCCTGAAAAGGCGTCTGAAAGGCTACCTGCCGATAACGTGTCTGGACAGAGAACGTCACGAACGCA
TGGCGGCAACCATTCGACATAACCGCGCGCGCGGGCGCCACCAGATCCACGCCATGTCAGAAATCGTGCGCGAACTTTCT
CTGCTAGGCTGGGACGAGAGCAAAATCGGCCAGGAGTTAGGTATGGACGCCGATGAAGTCCTGCGCCTGAAACAGATCAA
CGGCCTGCAGGAGCTTTTTGCAGACCGTCGATTCTCCAGAGCGTGGACGGTTAAATAA

Protein sequence :
MQHRLTTEITHFLSELPEEERIAAINEFRMAIHSVSPFRDEPVDCVLWVKNDHISPNDYNPNNVAPPEKKLLLKSIEQDG
FTQPIVVVKANTEEYEIVDGFHRHELGKGKAALKRRLKGYLPITCLDRERHERMAATIRHNRARGRHQIHAMSEIVRELS
LLGWDESKIGQELGMDADEVLRLKQINGLQELFADRRFSRAWTVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 9e-55 61
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 9e-55 61
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 7e-55 60
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 7e-55 60
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 7e-56 60
c5208 NP_757056.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-42 58
ORF_30 AAZ04440.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-42 58
APECO1_3503 YP_854305.1 hypothetical protein Not tested PAI I APEC-O1 Protein 2e-42 58
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 2e-55 57
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 2e-55 56
M5005_Spy_0164 YP_281528.1 parB-like nuclease Not tested Not named Protein 9e-31 52
ef0120 AAM75321.1 EF0120 Not tested Not named Protein 9e-32 51
EF0607 NP_814365.1 ParB-like nuclease domain-containing protein Not tested Not named Protein 1e-31 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A0701 YP_002214597.1 IbrB protein VFG1505 Protein 3e-56 60