Gene Information

Name : SeD_A0677 (SeD_A0677)
Accession : YP_002214575.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Resistance
Product : transposon Tn10 TetD protein
Function : -
COG functional category : K : Transcription
COG ID : COG4977
EC number : -
Position : 676435 - 676776 bp
Length : 342 bp
Strand : +
Note : identified by match to protein family HMM PF00165

DNA sequence : 
ATGACCATTTCCGCTCAGGTTATCGACACGATTGTCGAGTGGATTGATGATAATTTGAATCAGCCGTTACGTATTGATGA
TATTGCCCGTCATGCGGGGTATTCCAAGTGGCACCTGCAGCGCCTTTTTATGCAGTACAAAGGGGAGAGTCTGGGGCGCT
ACGTGCGTGAACGGAAGCTAAAACTGGCGGCGCGCGACCTGCGCGACACCGACCAGAAGGTGTATGATATTTGTCTCAAG
TATGGTTTTGATTCGCAGCAAACCTTTACGCGCATTTTTACCCGCACGTTCAACCTGCCGCCAGGCGCTTATCGTAAAGA
AAAGCATGGTCGTACGCATTGA

Protein sequence : 
MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFMQYKGESLGRYVRERKLKLAARDLRDTDQKVYDICLK
YGFDSQQTFTRIFTRTFNLPPGAYRKEKHGRTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 5e-19 49
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-17 47
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-17 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein CP001138.1.gene612.p Protein 4e-44 100
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein CP001918.1.gene327.p Protein 1e-19 49
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein CP000647.1.gene4499. Protein 3e-19 49
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein CP001138.1.gene4488. Protein 2e-19 49
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein NC_010558.1.6276025. Protein 5e-18 47
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein BAC0371 Protein 2e-18 46
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein NC_002695.1.914293.p Protein 2e-18 46
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein CP000647.1.gene1624. Protein 2e-18 46
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein CP000034.1.gene4505. Protein 4e-18 45
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein CP001918.1.gene2033. Protein 1e-18 45
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein NC_002695.1.917339.p Protein 8e-19 43
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein BAC0560 Protein 8e-19 43
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein CP000034.1.gene1596. Protein 7e-19 43
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein CP001138.1.gene1637. Protein 8e-19 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein VFG0585 Protein 2e-19 49
SeD_A0677 YP_002214575.1 transposon Tn10 TetD protein VFG1038 Protein 5e-18 47