Gene Information

Name : SeD_A0594 (SeD_A0594)
Accession : YP_002214499.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 608741 - 609433 bp
Length : 693 bp
Strand : +
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGCTGAATAGTATAAAAGTAGGCTTTATTGTTCTTCTCACGTTATTTACTTCGCTGAACGTACAGGCGGCGGGGGGGAT
TGCATTAGGCGCCACGCGCGTTATTTATCCCTCGGCGGCGAAACAGACTTCTCTGGCAATCAGTAATAGCGATACTCAAG
AACGTTACCTCGTCAATTCATGGATCGAAAATAGCGCCGGGCAGAAAGAAAAAACGTTTATCGTTACGCCGCCTTTATTC
GTCAGCGAACCCAAAAGCGAAAACACGCTGCGTATTATCTACGCCGGGCAACCGCTACCCGGGGATCGGGAGTCGTTATT
CTGGATGAACGTGAAAGCCATCCCGTCGGTCGATAAAAGTCATATTGAAGGAAAAAACGTTCTGCAACTGGCGATTCTGT
CGCGCATCAAACTGTTCGTGCGTCCGGCGAATTTGCCGCAGACGCCGGAAGACGCGCCGACCTTGCTGAAATTTTCCCGT
GTCGGCAACCATCTCAAGATAACCAACCCATCTGCTTATTACCTCACGCTGGTCAATATCAGCGTGGGCGCGAAAAAGAT
TGATAATGTGATGATCGCGCCAAAAAGCGACATGCAAATTCCCTTACCGACAGGCGCGCAGGGCAGCGTGACATTTCAGA
CCGTCAATGATTACGGCGCATTGACGTCGGCGACAACGGCCAGTCTCGGTTAA

Protein sequence : 
MLNSIKVGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKEKTFIVTPPLF
VSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR
VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGSVTFQTVNDYGALTSATTASLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-48 51
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 5e-52 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A0594 YP_002214499.1 chaperone protein FimC VFG0445 Protein 5e-104 99
SeD_A0594 YP_002214499.1 chaperone protein FimC VFG1644 Protein 2e-48 51
SeD_A0594 YP_002214499.1 chaperone protein FimC VFG0911 Protein 1e-48 50
SeD_A0594 YP_002214499.1 chaperone protein FimC VFG0875 Protein 2e-53 48
SeD_A0594 YP_002214499.1 chaperone protein FimC VFG0455 Protein 1e-40 42