|
Name : SeD_A4931 (SeD_A4931) Accession : YP_002218397.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Unknown Product : type I restriction-modification system, M subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : 2.1.1.72 Position : 4767337 - 4768956 bp Length : 1620 bp Strand : - Note : identified by match to protein family HMM PF02384 DNA sequence : ATGGCCAAAGCACCAACGAAAAAAGCCAAAGCAAAGAAAGGTTTTGAAGACACATTATGGGATACCGCGAACCAGCTTCG CGGCAGCGTTGAATCCTCCGAGTACAAGCACGTGGTGCTGAGCCTCGTGTTCCTCAAATTTATTAGCGATAAGTTTGAAG CCCGTCGCAAACAGATGGAAGACGAAGGCCAGGGCGATTTCCTCGAAATGGAAGTCTTCTATCAGCAGGACAACATCTTC TACCTGCCGGAGGAAGCGCGCTGGTCGTTCATCAAGCAAAACGCTAAGCAGGACGATATCGCCGTACGCATTGATACCGC CCTCTCCACCATTGAGAAGCGCAACCCGTCGCTGAAAGGCGCGCTGCCGGACAACTACTTCAGCCGTCAGAATCTGGAAA CCAAGAAGCTGGCGTCGCTTATCGACACCATCGATAACATCGAAACGCTGGCCCACGAAACTGACGTGGAAGCGCTGTCG AAAGAAGACCTTGTCGGTCGCGTGTACGAATACTTCCTCGGCAAGTTTGCCGCAACCGAAGGCAAAGGCGGGGGCGAGTT CTATACGCCGAAATGCGTGGTGACGCTGCTGACCGAAATGCTCGAACCGTTCCAGGGCAAAATTTATGACCCCTGCTGCG GCTCGGCGGGGATGTTTGTCCAGTCGGTGAAGTTTGTTGAAAGCCATCAGGGGAAAAGCCGCGATATCGCCCTGTACGGC CAGGAGCTGACGGCCACCACCTACAAGCTGGCGAAGATGAACCTTGCGATTCGCGGACTTTCCGCCAACCTTGGTGAGCG CCCGGCGGACACCTTCTTCAGCGACCAGCACCCGGACCTGAAAGCCGACTATATTCTGGCCAACCCGCCGTTTAACCTGA AAGACTGGCGTAACGACGCCGAGCTGACCAAAGACCCGCGCTTTGCTGGCTACCGCACGCCGCCGACCGGTAACGCCAAC TACGGCTGGATTTTGCATATGCTTTCCAAGTTGTCGGCCAACGGCACCGCCGGTTTTGTGCTGGCGAACGGCTCGATGAG CTCCAACACCAGCGGCGAAGCCGAGATCCGCGCGCAGATGATCGAAAACGATCTGATCGACTGCATGATCGCCCTGCCCG GACAGCTGTTCTTCACCACCCAAATCCCGGTGTGCCTGTGGTTTATGACCAAATCGAAGGCAGCCGATCCGGCCAAAGGC TATCGTAACCGTCAGGGTGAGACGCTGTTTATTGATGCGCGTAACCTTGGTACCATGATCAACCGCACCACCAAAGAGCT GACGGCAGACGATATTGCCACCATCGCCGATACCTACCATGCCTGGCGCAGCACGCCGGAAGAGCTGGTCGAGCGCGTTA AGCGCGGCGACAGCCAGTTGGCGCAATATGAAGACCAGGCCGGATTCTGCAAGGTTGCGACCATTGCAGAGATCAAGGCG AACGACTCTGTGCTGACGCCGGGCCGTTATGTCGGTGCCGCCGAGCAGGAAGACGACGGCGTAGCGTTTGAAACCAAAAT GCGCGAGTTGTCGCAGACGTTGTTTGCACAGATGAAGCAGGCGGAAGAACTGGATAACGCGATTCGTCAGAATCTGGAGG TGCTGGGTTATGGCATTTGA Protein sequence : MAKAPTKKAKAKKGFEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQMEDEGQGDFLEMEVFYQQDNIF YLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYFSRQNLETKKLASLIDTIDNIETLAHETDVEALS KEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVVTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYG QELTATTYKLAKMNLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNDAELTKDPRFAGYRTPPTGNAN YGWILHMLSKLSANGTAGFVLANGSMSSNTSGEAEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAKG YRNRQGETLFIDARNLGTMINRTTKELTADDIATIADTYHAWRSTPEELVERVKRGDSQLAQYEDQAGFCKVATIAEIKA NDSVLTPGRYVGAAEQEDDGVAFETKMRELSQTLFAQMKQAEELDNAIRQNLEVLGYGI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 2e-137 | 52 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 2e-137 | 52 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 5e-136 | 51 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 4e-116 | 44 |
