Gene Information

Name : SeD_A3363 (SeD_A3363)
Accession : YP_002217006.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : fimbrial usher protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 3236275 - 3238764 bp
Length : 2490 bp
Strand : -
Note : identified by match to protein family HMM PF00577

DNA sequence :
ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG
CCTGCTGGACAGCGGGAACCTGTCTAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA
TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCGGTCAGGGTTGTACCGGTTGCCGGACGCGACGCG
GCCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC
CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA
CCTTCATTATTCCCCAGGCCTGGATGCGTTATCAGGACCCGGACTGGGTGCCCCCTTCACGCTGGAGCGACGGCGTCACC
GCCGGCCTGCTTGATTACAGCCTGATGGTCAACCGCTATATGCCGCAGCAGGGGGAAACCTCTACCAGCTACAGCCTCTA
CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGATTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCAGGGCG
CATCACAGTCCGATTTTTATCTGCCGCAGACGTATCTGTTCCGTGCCTTGCCAGCACTGCGCTCAAAACTGACGCTCGGA
CAGACGTACCTCAGCTCCGCTATTTTTGACTCCTTCCGCTTTGCCGGGCTCACTTTGGCCAGCGATGAGCGCATGCTGCC
GCCCTCTCTTCAGGGGTATGCCCCGAAAATTAGCGGCATTGCGAACAGTAATGCACAGGTCACCGTCAGCCAGAATGGTC
GCATTCTGTACCAGACCCGGGTGTCGCCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGCAACCTGGAT
GTCAGCGTCCGGGAAAGCGACGGTAGCGTCCGGACCTGGCAGGTCAACACGGCCAGCGTCCCCTTTATGGCACGCCAGGG
ACAGGTTCGCTATAAGGTGGCCGCCGGACGTCCGCTGTACGGCGGGACGCATAACAACAGCACGGTCAGCCCTGACTTTC
TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG
TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGTTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT
GCCGCATGGGCAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG
CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTGTCCATGCCGGAGTACCTGCAGCGTCGGACCACTGACGGCGGC
GATGCATGGCATGAAAAACAGAGCTACACCGTGACTTATAGCCAGTCCGTTCCGGTACTCAACATGAGCGCGGCCCTCTC
GGTAAGCCGGCTCAATTACTGGAACGCACAGTCCAACAATAACTACATGCTCAGCCTCAACAAGGTGTTCAGTCTCGGCG
ACCTTCAGGGACTCTCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGTAGCCAGAACCAGGTCTACGCC
ACCATCAGTATCCCGTGGGGAGACAGTCGCCAGGTGAGTTACAGCGTACAGAAAGATAACCGGGGCGGCCTGCAGCAGAC
CGTGAATTACAGCGATTTCCATAACCCGGACACTACATGGAACATCAGCGCCGGTCATAACCGTTATGACACCGGCAGCA
ACAGCAGCTTCAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGCCAGGCGGCAGCGGACGCCACCCTGCAGCCCGGACAG
TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACTGCCACCGCCCACGGTGCCGCTTTCAGCCAGTCGATGGCCGG
GAATGAGCCCCGCATGATGATAGATACCGGAGACGTGGCCGGTGTGCCGGTGAACGGCAACAGCGGGGTGACCAACCGCT
TCGGGGTGGGCGTGGTGAGCGCCGGCAGCAGCTATCGCCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCGGAGGAC
GTGGACGTCAGCAGCTCCGTCATCAGTCAGGTACTGACGGAGGGCGCGGTGGGCTACCGGAAGATTGACGCCAGCCAGGG
GGAGCAGGTGCTCGGTCATATCCGGCTGGCTGATGGCGCAAGTCCGCCGTTTGGCGCCCTGGTGGTGTCCGGGAAAACCG
GCAGAACCGCGGGGATGGTCGGAGATGGCGGTCTGGCCTACCTGACAGGTCTCAGCGGGGAAGACCGCCGGACCCTGAAT
GTGTCCTGGGATGGCCGGGTGCAGTGCAGACTCACCCTGCCGGAAACGGTGACACTCAGCCGGGGGCCGCTGTTACTGCC
CTGCAGATAA

Protein sequence :
MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDA
AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT
AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG
QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD
VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ
SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRTTDGG
DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSLNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYA
TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ
YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED
VDVSSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMVGDGGLAYLTGLSGEDRRTLN
VSWDGRVQCRLTLPETVTLSRGPLLLPCR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 3e-125 41
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 5e-124 41
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 4e-124 41
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 4e-125 41
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 5e-125 41
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 4e-125 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A3363 YP_002217006.1 fimbrial usher protein VFG1548 Protein 2e-125 41
SeD_A3363 YP_002217006.1 fimbrial usher protein VFG0884 Protein 2e-125 41
SeD_A3363 YP_002217006.1 fimbrial usher protein VFG0895 Protein 2e-125 41