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Name : SeD_A3270 (SeD_A3270) Accession : YP_002216924.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3144219 - 3146864 bp Length : 2646 bp Strand : + Note : identified by match to protein family HMM PF00577 DNA sequence : ATGCTTCTAAGCCTCTCCCCTTATAGCGCGTCAGGCAAAGACATCGAATTTAATACCGATTTCCTCGATGTAAAAAATCG CGATAACGTTAACATTGCACAGTTTTCTCGTAAGGGTTTTATTCTGCCAGGCGTCTACCTTTTACAAATTAAAATTAACG GACAGACTCTGCCGCAGGAATTTCCTGTTAACTGGGTTATTCCAGAACATGATCCACAAGGAAGTGAGGTTTGCGCAGAA CCAGAATTAGTTACGCAATTGGGTATAAAGCCGGAACTCGCGGAAAAACTCGTCTGGATAACGCACGGTGAACGACAATG TCTGGCGCCAGATTCACTGAAAGGCATGGATTTTCAGGCTGACCTGGGACACTCCACGCTGCTGGTGAATTTACCCCAGG CGTATATGGAATACAGCGATGTCGACTGGGACCCGCCCGCCCGCTGGGATAATGGTATTCCCGGCATCATTCTGGATTAC AACATTAATAATCAGCTCCGCCACGATCAAGAAAGCGGCAGCGAAGAGCAAAGCATCAGCGGCAACGGGACGTTAGGCGC GAACCTGGGCGCATGGCGACTGCGGGCCGACTGGCAGGCCAGCTACGACCATCGTGACGATGACGAGAACACTTCCACCC TCCACGATCAGAGCTGGAGCCGCTACTACGCCTATCGCGCACTACCGACGCTCGGGGCCAAACTTACGCTGGGCGAAAGC TATCTCCAGTCCGATGTTTTCGACAGCTTTAACTATATCGGTGCCAGCGTCGTTTCTGACGATCAGATGCTGCCGCCGAA ACTGCGCGGCTATGCGCCGGAGATCGTGGGCATTGCGCGCTCTAATGCCAAAGTCAAAGTCTCCTGGCAGGGGCGCGTAC TGTATGAAACGCAGGTGCCCGCAGGACCGTTCCGTATTCAGGATCTCAACCAGTCCGTTTCCGGTACGTTGCACGTCACC GTGGAAGAGCAGAACGGTCAGACCCAGGAGTTTGACGTTAACACCGCATCGGTTCCCTTCCTGACGCGCCCCGGCATGGT GCGCTACAAGATGGCGCTGGGCCGCCCGCAGGACTGGGATCATCACCCCATTACCGGCACATTCGCCTCGGCGGAAGCTT CGTGGGGGGTCACCAACGGCTGGTCGCTCTATGGCGGCGCAATTGGAGAAAGCAACTATCAGGCCGTGGCGCTGGGAAGC GGTAAGGATCTTGGCGTGGTGGGCGCGGTGGCGGTCGACATTACGCACTCCATCGCCCACATGCCGCAAGACGACGGGTT TGACGGCGAAACGCTGCAGGGTAACTCATATCGCATCAGCTACTCCCGTGACTTTGATGAAATCGACAGCCGACTAACCT TTGCCGGATACCGCTTCTCAGAAAAGAACTTTATGAGCATGAGCGACTATCTGGATGCGAAAACCTATCATCATCTCAAT GCCGGTCACGAAAAAGAACGCTATACGGTCACCTATAACCAGAACTTCCGTGAACAGGGCATGAGCGCCTATTTCAGCTA CTCACGCAGTACCTTCTGGGACAGCCCGGATCAGAGTAACTATAACCTGTCTCTTTCCTGGTACTTCGACTTAGGGTCGA TAAAAAATCTCAGTGCGTCGCTGAACGGCTATCGCAGCGAATATAACGGTGATAAAGATGATGGCGTTTATATCTCGCTG TCTGTTCCCTGGGGCAATGATTCCATCAGCTACAACGGTACGTTTAACGGTAGTCAACACCGTAATCAGCTCGGCTATTC CGGCCACAGCCAGAACGGCGATAACTGGCAGCTTCACGTCGGGCAGGATGAACAAGGCGCACAGGCAGACGGTTATTACA GCCATCAGGGCGCGCTGACGGACATCGATCTGAGCGCGGATTATGAAGAAGGATCGTACCGTTCGCTGGGCATGTCGCTG CGCGGCGGCATGACGCTGACCACCCAGGGCGGCGCGCTACACCGGGGAAGTTTAGCGGGCAGCACACGTTTGCTGGTTGA TACCGACGGCATTGCGGACGTCCCCGTTAGCGGTAACGGCTCGCCAACCTCAACCAACATTTTCGGCAAGGCCGTGATTG CGGATGTCGGAAGCTATTCGCGCAGCCTGGCGCGTATCGATCTGAACAAATTGCCGGAGAAGGCGGAAGCTACTAAGTCG GTTGTGCAGATCACGCTCACCGAAGGCGCCATCGGCTACCGTCACTTTGACGTGGTCAGCGGCGAGAAAATGATGGCGGT TTTCCGGCTGGCAGACGGCGACTTCCCACCGTTCGGCGCCGAAGTGAAAAACGAGCGCCAGCAGCAGTTGAGCCTGGTGG CCGATGACGGCAACGCCTGGCTGGCGGGCGTAAAAGCCGGGGAAACATTGAAAGTCTTCTGGGATGGCGCGGCGCAGTGT GAAGCATCACTACCGTCCACGTTTACACCGGAGCTATTGGCCAACGCGCTATTGCTGCCGTGCAAAATGCTGGAAGGTCA GCCCCCCACCGCACCGCAGAAAAGTTCTCCGCTGCCTGCGCAACCGCTAATCCAGGAACATACGCAAACCGATGGCCAAC CGGCCGCGCCGGTGGCGACAACCACTCAAACCCCGCCCATACCGCTGGCTGACAACCATGCGGTGAATCGCAAGGATATG GAATAA Protein sequence : MLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAE PELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDY NINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGES YLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVT VEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGS GKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLN AGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISL SVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSL RGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKS VVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLSLVADDGNAWLAGVKAGETLKVFWDGAAQC EASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDM E |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 1e-172 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 9e-169 | 45 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-167 | 45 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 3e-167 | 45 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 1e-168 | 45 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 1e-168 | 45 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 9e-169 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeD_A3270 | YP_002216924.1 | fimbrial usher protein | VFG1548 | Protein | 5e-169 | 45 |
| SeD_A3270 | YP_002216924.1 | fimbrial usher protein | VFG0884 | Protein | 5e-169 | 45 |
| SeD_A3270 | YP_002216924.1 | fimbrial usher protein | VFG0895 | Protein | 6e-169 | 45 |
