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Name : SeD_A3208 (SeD_A3208) Accession : YP_002216867.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Virulence Product : type III secretion outer membrane pore, YscC/HrcC family Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3085994 - 3087538 bp Length : 1545 bp Strand : - Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 DNA sequence : ATGGCGCTACAGCTAAAGGAGCCTGTCATTGTTAGCAAAATGGCGGCACGAAAAAAAATTACGGGCAACTTTGAGTTTCA CGATCCTAACGCATTACTGGAGAAGCTTTCCCTACAACTGGGGCTGATTTGGTATTTCGATGGGCAGGCTATCTATATTT ATGACGCCAGTGAAATGCGCAATGCCGTGGTTTCTTTACGCAACGTCTCACTCAATGAGTTCAACAATTTTCTAAAACGC TCAGGTTTATATAACAAAAATTACCCGCTACGTGGCGATAACCGTAAAGGAACATTCTATGTTTCAGGGCCACCCGTCTA TGTTGATATGGTGGTCAACGCCGCCACCATGATGGACAAGCAAAACGATGGTATTGAGCTGGGACGTCAGAAAATAGGGG TGATGCGTCTGAACAATACCTTCGTGGGCGATCGTACCTATAATCTGCGCGATCAGAAAATGGTTATCCCCGGTATTGCC ACGGCCATTGAAAGGTTGTTGCAGGGAGAAGAGCAACCTTTAGGTAATATTGTCAGTAGCGAACCCCCGGCGATGCCAGC GTTTTCAGCGAATGGAGAAAAAGGTAAAGCAGCAAATTATGCCGGTGGCATGAGTCTGCAGGAAGCTTTAAAGCAAAATG CCGCGGCGGGCAATATTAAAATCGTGGCCTATCCGGATACCAACAGTTTGTTAGTAAAGGGAACGGCTGAGCAGGTGCAT TTTATCGAAATGCTGGTTAAAGCGCTGGATGTCGCCAAACGTCACGTAGAATTATCCCTGTGGATTGTCGATCTTAATAA AAGCGATCTGGAGCGTTTGGGCACTTCATGGAGCGGCAGCATTACTATTGGGGACAAACTTGGCGTGTCATTAAACCAGT CTTCAATAAGTACCCTCGATGGCAGTCGATTCATCGCCGCGGTCAATGCGTTAGAAGAGAAGAAACAGGCGACGGTGGTT TCACGCCCGGTATTACTGACCCAGGAAAATGTTCCCGCTATTTTTGATAACAACAGAACGTTTTACACCAAGCTGATTGG GGAACGTAATGTGGCGCTTGAGCATGTAACATACGGAACAATGATCCGAGTGCTGCCCCGTTTTTCCGCAGATGGTCAGA TAGAAATGTCGCTGGACATTGAAGATGGCAACGATAAGACGCCGCAATCCGATACTACCACCTCCGTAGATGCGTTACCC GAAGTCGGGCGAACGTTAATTAGCACTATTGCGAGAGTGCCGCACGGAAAAAGTTTGCTGGTCGGTGGTTATACACGGGA TGCAAATACCGATACTGTCCAAAGTATTCCGTTTTTAGGCAAATTACCGCTTATTGGTAGCCTGTTCCGCTATTCCAGTA AGAATAAAAGTAATGTTGTTCGTGTGTTCATGATTGAACCAAAAGAAATTGTCGACCCGTTAACGCCGGATGCCAGCGAA TCGGTAAACAATATTCTGAAGCAAAGCGGTGCCTGGAGTGGGGACGATAAGTTACAGAAATGGGTTCGTGTTTATCTGGA TAGAGGTCAGGAGGCAATTAAATGA Protein sequence : MALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIYDASEMRNAVVSLRNVSLNEFNNFLKR SGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAATMMDKQNDGIELGRQKIGVMRLNNTFVGDRTYNLRDQKMVIPGIA TAIERLLQGEEQPLGNIVSSEPPAMPAFSANGEKGKAANYAGGMSLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVH FIEMLVKALDVAKRHVELSLWIVDLNKSDLERLGTSWSGSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVV SRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALP EVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDASE SVNNILKQSGAWSGDDKLQKWVRVYLDRGQEAIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| invG | NP_461819.1 | outer membrane secretin precursor | Virulence | SPI-1 | Protein | 0.0 | 100 |
| invG | NP_806501.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 0.0 | 99 |
| invG | YP_217817.1 | invasion protein; outer membrane | Virulence | SPI-1 | Protein | 0.0 | 99 |
| invG | NP_457292.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 0.0 | 99 |
| ECs3733 | NP_311760.1 | EivG | Not tested | LIM | Protein | 8e-143 | 56 |
| invG | AAS66859.1 | InvG | Not tested | SSR-2 | Protein | 1e-125 | 50 |
| ysaC | AAS66838.1 | YsaC | Not tested | SSR-1 | Protein | 9e-93 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeD_A3208 | YP_002216867.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG0559 | Protein | 0.0 | 100 |
| SeD_A3208 | YP_002216867.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG1004 | Protein | 1e-122 | 52 |
| SeD_A3208 | YP_002216867.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG2463 | Protein | 3e-100 | 43 |
