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Name : SeD_A3196 (SeD_A3196) Accession : YP_002216855.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Virulence Product : type III secretion low calcium response chaperone LcrH/SycD Function : - COG functional category : - COG ID : - EC number : - Position : 3075295 - 3075792 bp Length : 498 bp Strand : - Note : identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552 DNA sequence : ATGGATTATCAAAATAATGTCAGCGAAGAACGTGTTGCGGAAATGATTTGGGATGCCGTTAGTGAAGGCGCCACGCTAAA AGACGTTCATGGGATCCCTCAAGATATGATGGACGGTTTATATGCTCATGCTTATGAGTTTTATAACCAGGGACGACTGG ATGAAGCTGAGACATTCTTTCGTTTCTTATGCATTTATGATTTTTACAATCCCGATTACACCATGGGACTGGCGGCGGTA TGCCAACTGAAAAAACAATTTCAGAAAGCATGTGACCTTTATGCAGTAGCGTTTACGTTACTTAAAAATGATTATCGCCC CGTTTTTTTTACCGGGCAGTGTCAATTATTAATGCGTAAGGCAGCAAAAGCCAGACAGTGTTTTGAACTTGTCAATGAAC GTACTGAAGATGAGTCTCTGCGGGCAAAAGCGTTGGTCTATCTGGAGGCGCTAAAAACGGCGGAGACAGAGCAGCACAGT GAACAAGAAAAGGAATAA Protein sequence : MDYQNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAV CQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKTAETEQHS EQEKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sicA | YP_217805.1 | surface presentation of antigens; secretory proteins | Virulence | SPI-1 | Protein | 6e-73 | 100 |
| spaT | NP_457280.1 | unknown function | Virulence | SPI-1 | Protein | 6e-73 | 100 |
| spaT | NP_806489.1 | hypothetical protein | Virulence | SPI-1 | Protein | 6e-73 | 100 |
| sicA | NP_461807.1 | secretion chaperone | Virulence | SPI-1 | Protein | 6e-73 | 100 |
| sycB | AAS66850.1 | SycB | Not tested | SSR-1 | Protein | 4e-34 | 55 |
| sicA | AAS66869.1 | SicA | Virulence | SSR-2 | Protein | 6e-28 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeD_A3196 | YP_002216855.1 | type III secretion low calcium response chaperone LcrH/SycD | VFG0547 | Protein | 2e-73 | 100 |
| SeD_A3196 | YP_002216855.1 | type III secretion low calcium response chaperone LcrH/SycD | VFG0988 | Protein | 4e-44 | 60 |
| SeD_A3196 | YP_002216855.1 | type III secretion low calcium response chaperone LcrH/SycD | VFG2451 | Protein | 7e-46 | 60 |
| SeD_A3196 | YP_002216855.1 | type III secretion low calcium response chaperone LcrH/SycD | VFG1769 | Protein | 3e-40 | 52 |
