Gene Information

Name : SeD_A3194 (SeD_A3194)
Accession : -
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : -
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3072254 - 3073483 bp
Length : 1230 bp
Strand : -
Note : cell invasion protein SipC (Effector protein sipC); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM TIGR02101

DNA sequence :
ATGTTAATTAGTAATGTGGGAATAAATCCCGCCGCTTATTTAAATAATCATTCTGTTGAGAATAGTTCACAGACAGCTTC
GCAATCCGTTAGCGCTAAAGATATTCTGAATAGTATTGGTATTAGCAGCAGTAAAGTCAGTGACCTGGGGTTGAGTCCTA
CACTGAGCGCGCCTGCGCCAGGGGTATTAACGCAAACCCCCGGAACGATCACGTCCTTTTTAAAAGCCAGTATTCAAAAT
ACCGACATGAATCAGGATTTGAATGCTCTGGCAAATAATGTCACGACTAAAGCGAATGAGGTTGTGCAAACCCAGTTACG
CGAGCAGCAGGCAGAAGTCGGAAAGTTTTTTGATATTAGCGGAATGTCTTCCAGTGCCGTTGCGCTGTTGGCTGCCGCGA
ATACGTTAATGCTGACGTTGAACCAGGCTGATAGCAAACTGTCTGGTAAGTTGTCATTAGTCAGCTTTGATGCAGCTAAA
ACGACAGCAAGCTCCATGATGCGCGAAGGGATGAATGCGTTGTCCGGTAGTATTTCCCAGAGCGCGCTTCAGTTGGGGAT
CACTGGCGTGGGCGCCAAACTGGAATATAAGGGGCTGCAGAATGAAAGAGGCGCGCTTAAACATAATGCCGCGAAGATCG
ATAAACTGACCACTGAAAGCCACAGTATTAAAAACGTGCTGAACGGGCAGAATAGCGTCAAACTCGGTGCTGAAGGCGTC
GATTCTCTGAAATCGTTAAATATGAAGAAAACCGGTACCGATGCGACAAAAAATCTTAATGATGCGACGCTTAAATCTAA
TGCCGGAACCAGCGCCACGGAAAGTCTGGGTATTAAAGACAGTAATAAACAAATCTCCCCTGAACATCAGGCTATTCTGT
CGAAACGTCTTGAGTCTGTCGAATCCGATATTCGTCTTGAGCAGAATACCATGGATATGACCCGAATTGATGCGCGCAAG
ATGCAGATGACGGGCGATCTGATTATGAAGAACTCGGTCACGGTCGGTGGTATTGCAGGGGCGTCCGGGCAGTACGCCGC
TACTCAGGAACGTTCCGAGCAGCAAATTAGCCAGGTGAATAACCGTGTTGCCAGCACCGCATCGGACGAAGCCCGTGAAA
GTTCACGTAAATCGACCAGCCTGATTCAGGAAATGCTGAAAACAATGGAGAGCATTAACCAGTCGAAAGCATCCGCACTT
GCTGCTATCGCAGGCAATATTCGCGCTTAA

Protein sequence :
-

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sipC YP_217803.1 cell invasion protein Virulence SPI-1 DNA 0.0 99.6
sipC NP_461805.1 translocation machinery component Virulence SPI-1 DNA 0.0 99.5
sipC NP_457278.1 pathogenicity island 1 effector protein Virulence SPI-1 DNA 0.0 99.1
sipC NP_806487.1 pathogenicity island 1 effector protein Virulence SPI-1 DNA 0.0 99.1