|
Name : SeD_A3174 (SeD_A3174) Accession : YP_002216836.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Virulence Product : chelated iron transport system membrane protein YfeD Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG1108 EC number : - Position : 3053344 - 3054192 bp Length : 849 bp Strand : + Note : identified by match to protein family HMM PF00950 DNA sequence : ATGTTCTTAACAACGTTACTGGAACCCTTTCAGTTTGATTTTATGGTGAACGCCCTTATGGTTTCGGTCATTGTGGCGAT TCCCTGCGCCTTACTGTCCGTGTTTTTAGTGTTAAAAGGCTGGGCGTTAATGGGCGATGCAATGAGTCATGCGGTATTCC CCGGGGTCGTGCTGGCATATATTGTGGGGATCCCCCTGGCGATTGGCGCCTTCATTGCCGGATTATTTTGCGCTATCGCG ACCGGCTATCTGGACGATAACAGCCGCATCAAACGTGATACGGTGATGGGCATCGTCTTTTCCGGGATGTTTGGCGCAGG TCTGGTGCTCTATGTTTCTATTCAATCGGAAGTGCATCTGGATCACATCCTGTTTGGGGATATGCTGGGCGTATCGCTGG GGGATATCGTACAAACGTCGGTTATTGCGCTGGGTATTGCGTTAATCATAGGGCTGAAATGGAAAGATCTCCTGCTACAC GCTTTTGACCCGCACCAGGCGAAAGCCAGCGGGCTGAATACCACGCTACTGCATTATGGCCTGCTATGTATGATTGCGCT GACTATCGTCGCCACGCTGAAATCGGTGGGCATTATTCTGTCGATCTCACTGCTTATCGCCCCCGGCGCAATTGCCATTT TGCTGACGCGACGCTTTGCGCGCGCGCTGGGATTAGCGGTGAGTCTGTCAGTTATTACCGCTTTTGCGGGCGTCTATCTG TCTTTTTATCTTGATAGCGCGCCAGCGCCGACCATAGTGGTATTATTTGCCATCGTATTTATTGCGGTATTTATTTACGC AACATGGCGCGACAGGCGTAATGAAATCGTACCAGAGGCGCAAGGTTAA Protein sequence : MFLTTLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIA TGYLDDNSRIKRDTVMGIVFSGMFGAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLH AFDPHQAKASGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFARALGLAVSLSVITAFAGVYL SFYLDSAPAPTIVVLFAIVFIAVFIYATWRDRRNEIVPEAQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sitD | YP_217784.1 | iron transporter: fur regulated | Virulence | SPI-1 | Protein | 6e-103 | 100 |
| sitD | NP_461785.1 | permease | Virulence | SPI-1 | Protein | 5e-103 | 99 |
| sitD | AAD41068.1 | SitD | Virulence | centisome 63 pathogenicity island | Protein | 4e-103 | 99 |
| sitD | NP_457258.1 | Iron transport protein, inner membrane component | Virulence | SPI-1 | Protein | 8e-103 | 99 |
| sitD | NP_806467.1 | iron transporter inner membrane protein | Virulence | SPI-1 | Protein | 8e-103 | 99 |
| sitC | NP_457257.1 | Iron transport protein, inner membrane component | Virulence | SPI-1 | Protein | 1e-33 | 41 |
| sitC | AAD41067.1 | SitC | Virulence | centisome 63 pathogenicity island | Protein | 7e-34 | 41 |
| sitC | NP_806466.1 | iron transporter inner membrane protein | Virulence | SPI-1 | Protein | 1e-33 | 41 |
| sitC | YP_217783.1 | iron transporter: fur regulated | Virulence | SPI-1 | Protein | 1e-33 | 41 |
| sitC | NP_461784.1 | permease | Virulence | SPI-1 | Protein | 1e-33 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeD_A3174 | YP_002216836.1 | chelated iron transport system membrane protein YfeD | BAC0352 | Protein | 2e-103 | 99 |
| SeD_A3174 | YP_002216836.1 | chelated iron transport system membrane protein YfeD | BAC0442 | Protein | 5e-55 | 54 |
| SeD_A3174 | YP_002216836.1 | chelated iron transport system membrane protein YfeD | BAC0441 | Protein | 8e-34 | 43 |
| SeD_A3174 | YP_002216836.1 | chelated iron transport system membrane protein YfeD | BAC0351 | Protein | 5e-34 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeD_A3174 | YP_002216836.1 | chelated iron transport system membrane protein YfeD | VFG0528 | Protein | 2e-103 | 99 |
| SeD_A3174 | YP_002216836.1 | chelated iron transport system membrane protein YfeD | VFG0527 | Protein | 4e-34 | 41 |
