Gene Information

Name : SeD_A3174 (SeD_A3174)
Accession : YP_002216836.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein YfeD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3053344 - 3054192 bp
Length : 849 bp
Strand : +
Note : identified by match to protein family HMM PF00950

DNA sequence :
ATGTTCTTAACAACGTTACTGGAACCCTTTCAGTTTGATTTTATGGTGAACGCCCTTATGGTTTCGGTCATTGTGGCGAT
TCCCTGCGCCTTACTGTCCGTGTTTTTAGTGTTAAAAGGCTGGGCGTTAATGGGCGATGCAATGAGTCATGCGGTATTCC
CCGGGGTCGTGCTGGCATATATTGTGGGGATCCCCCTGGCGATTGGCGCCTTCATTGCCGGATTATTTTGCGCTATCGCG
ACCGGCTATCTGGACGATAACAGCCGCATCAAACGTGATACGGTGATGGGCATCGTCTTTTCCGGGATGTTTGGCGCAGG
TCTGGTGCTCTATGTTTCTATTCAATCGGAAGTGCATCTGGATCACATCCTGTTTGGGGATATGCTGGGCGTATCGCTGG
GGGATATCGTACAAACGTCGGTTATTGCGCTGGGTATTGCGTTAATCATAGGGCTGAAATGGAAAGATCTCCTGCTACAC
GCTTTTGACCCGCACCAGGCGAAAGCCAGCGGGCTGAATACCACGCTACTGCATTATGGCCTGCTATGTATGATTGCGCT
GACTATCGTCGCCACGCTGAAATCGGTGGGCATTATTCTGTCGATCTCACTGCTTATCGCCCCCGGCGCAATTGCCATTT
TGCTGACGCGACGCTTTGCGCGCGCGCTGGGATTAGCGGTGAGTCTGTCAGTTATTACCGCTTTTGCGGGCGTCTATCTG
TCTTTTTATCTTGATAGCGCGCCAGCGCCGACCATAGTGGTATTATTTGCCATCGTATTTATTGCGGTATTTATTTACGC
AACATGGCGCGACAGGCGTAATGAAATCGTACCAGAGGCGCAAGGTTAA

Protein sequence :
MFLTTLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIA
TGYLDDNSRIKRDTVMGIVFSGMFGAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLH
AFDPHQAKASGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFARALGLAVSLSVITAFAGVYL
SFYLDSAPAPTIVVLFAIVFIAVFIYATWRDRRNEIVPEAQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-103 100
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-103 99
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-103 99
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-103 99
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-103 99
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-33 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-33 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-33 41
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 7e-34 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A3174 YP_002216836.1 chelated iron transport system membrane protein YfeD BAC0352 Protein 2e-103 99
SeD_A3174 YP_002216836.1 chelated iron transport system membrane protein YfeD BAC0442 Protein 5e-55 54
SeD_A3174 YP_002216836.1 chelated iron transport system membrane protein YfeD BAC0441 Protein 8e-34 43
SeD_A3174 YP_002216836.1 chelated iron transport system membrane protein YfeD BAC0351 Protein 5e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A3174 YP_002216836.1 chelated iron transport system membrane protein YfeD VFG0528 Protein 2e-103 99
SeD_A3174 YP_002216836.1 chelated iron transport system membrane protein YfeD VFG0527 Protein 4e-34 41