Gene Information

Name : SeD_A3173 (SeD_A3173)
Accession : YP_002216835.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein YfeC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3052493 - 3053353 bp
Length : 861 bp
Strand : +
Note : identified by match to protein family HMM PF00950; match to protein family HMM PF01032

DNA sequence : 
ATGAACTGGCTTGTTGAGCCGTTTGGCTACCAGTATATGCTCAACGCGATGTGGGTCTCCGCAATGGTGGGCGGTCTGTG
CGCGTTTCTCTCCTGCTATTTGATGCTCAAAGGCTGGTCGCTCATTGGCGATGCGCTATCTCACTCTATTGTGCCTGGCG
TCGCTGGCGCCTGGATGTTAGGGCTGCCCTTCTCGCTCGGCGCGTTTCTTTCCGGCGGACTGGCGGCAGGCAGTATGCTC
TTTCTTAACCAACGCTCACGCCTGAAAGAAGACGCGATTATCGGGCTTATCTTCTCCTCTTTTTTTGGCGTCGGCCTTTT
TATGGTGTCGCTCAATCCGATGTCGGTGAATATCCAGACGATTATTCTCGGTAACGTGCTGGCGATCGCGCCAGCGGATA
TTGCGCAACTGGCGATTATCGGCGCAGTCTCGCTGACGATTCTGCTGTTAAAGTGGAAAGATCTGATGGTCGTCTTTTTC
GATGAGACCCATGCGCGTTCTATCGGGCTTAATCCGGGTCGACTAAAGCTGTTGTTTTTCACTCTATTGTCCGTCTCTAC
CGTGGCGGCCCTGCAAACCGTTGGGGCGTTCCTGGTGATCTGTCTCGTCGTCACGCCGGGCGCGACGGCCTGGTTACTCA
CCGACCGTTTTCCACGTCTGCTCATGATTGCCGTCGTGATTGGTAGCCTGACCAGTTTTCTGGGCGCATGGCTTAGCTAC
TGGCTGGATGGCGCCACTGGCGGAATTATTGTCGTCATGCAAACCTTACTGTTCATCACAGCCTTTATTTTCGCCCCGAA
ACACGGTCTGTTAGCCAACCGTCGACGCGCCCGCCTGCAGAAGGAGCCGACATGTTCTTAA

Protein sequence : 
MNWLVEPFGYQYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAWMLGLPFSLGAFLSGGLAAGSML
FLNQRSRLKEDAIIGLIFSSFFGVGLFMVSLNPMSVNIQTIILGNVLAIAPADIAQLAIIGAVSLTILLLKWKDLMVVFF
DETHARSIGLNPGRLKLLFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLMIAVVIGSLTSFLGAWLSY
WLDGATGGIIVVMQTLLFITAFIFAPKHGLLANRRRARLQKEPTCS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 7e-115 100
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-115 100
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-115 100
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-115 99
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-115 99
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-39 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-39 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-38 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-39 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A3173 YP_002216835.1 chelated iron transport system membrane protein YfeC BAC0351 Protein 3e-115 100
SeD_A3173 YP_002216835.1 chelated iron transport system membrane protein YfeC BAC0441 Protein 6e-75 66
SeD_A3173 YP_002216835.1 chelated iron transport system membrane protein YfeC BAC0352 Protein 2e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A3173 YP_002216835.1 chelated iron transport system membrane protein YfeC VFG0527 Protein 3e-115 100
SeD_A3173 YP_002216835.1 chelated iron transport system membrane protein YfeC VFG0528 Protein 2e-39 42