Gene Information

Name : SeD_A3172 (SeD_A3172)
Accession : YP_002216834.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein YfeB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3051675 - 3052496 bp
Length : 822 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGAGTCAATCTGCGATTACCGTTGATCAAGTCACGGTGACGTATCGCAACGGTCATACCGCCCTACGGGACGCCACTTT
TCAGGTGCCTGGCGGTTCAATCGCCGCGCTGGTAGGCGTAAATGGTTCCGGTAAGTCTACGTTATTTAAAGCGTTAATGG
GCTTTGTGCATCTTGCGCAGGGCGATATCACTATCCTGCAACAGTCAGTCAACAAGGCACTGAAAAAAAACCTCATTGCT
TATGTTCCGCAATCGGAAGAAGTGGACTGGTCATTTCCGGTGCTGGTAGAAGATGTGGTGATGATGGGACGCTACGGCCA
TATGGGCTGGCTACGCCGTCCCAGTGCGCATGATCACGCCTGTGTTGACGCCGCGCTGGCGCGGGTGGATATGCAGGAAT
ATCGTCACAGGCAGATTGGCGAGCTGTCCGGCGGGCAGAAAAAACGTGTGTTTCTTGCCAGGGCCATCGCTCAGGATGGA
CAAGTAATCCTGCTGGATGAACCTTTTACCGGCGTGGATGTAAAAACCGAAGCGCGAATCATCGATCTACTACGGGAACT
GCGCGATGAAGGCCGCACGATGCTGGTCTCAACGCATAATCTCGGCTCCGTCACCGAGTTTTGCGACTATACGGTAATGA
TTAAAGGAACCGTACTGGCCAGCGGCCCTACCGAAACCACGTTTACCGCCGCGAATCTGGAACAGGCGTTTAGCGGCGTT
CTACGTCATATCGCGCTAAGCGGAGGCGAAGAGCACATCATCACCGATGACGAGCGCCCCTTTATTTCCCGGCGCGTGGC
CAGCGGAGGAAAATCGTCATGA

Protein sequence : 
MSQSAITVDQVTVTYRNGHTALRDATFQVPGGSIAALVGVNGSGKSTLFKALMGFVHLAQGDITILQQSVNKALKKNLIA
YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRPSAHDHACVDAALARVDMQEYRHRQIGELSGGQKKRVFLARAIAQDG
QVILLDEPFTGVDVKTEARIIDLLRELRDEGRTMLVSTHNLGSVTEFCDYTVMIKGTVLASGPTETTFTAANLEQAFSGV
LRHIALSGGEEHIITDDERPFISRRVASGGKSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 4e-126 99
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 4e-126 99
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-127 99
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 7e-128 99
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-128 99

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A3172 YP_002216834.1 chelated iron transport system membrane protein YfeB BAC0350 Protein 3e-128 99
SeD_A3172 YP_002216834.1 chelated iron transport system membrane protein YfeB BAC0440 Protein 6e-80 64
SeD_A3172 YP_002216834.1 chelated iron transport system membrane protein YfeB BAC0400 Protein 3e-49 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A3172 YP_002216834.1 chelated iron transport system membrane protein YfeB VFG0526 Protein 3e-128 99