Gene Information

Name : SeD_A3171 (SeD_A3171)
Accession : YP_002216833.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Virulence
Product : periplasmic chelated iron-binding protein YfeA
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3050761 - 3051678 bp
Length : 918 bp
Strand : +
Note : identified by match to protein family HMM PF01297

DNA sequence : 
ATGACGAATCTACATCGTCTGAAAACACTCCTGATTGCCGGTATTGTCGCGATACTCGCGCTATCGCCAGCCTATGCAAA
AGAGAAATTTAAAGTCATCACCACGTTTACCGTTATTGCCGACATGGCGAAAAACGTGGCGGGCGACGCAGCGGAAGTCA
GCTCAATTACCAAGCCCGGCGCTGAAATCCATGAGTATCAGCCAACGCCCGGCGATATTAAACGAGCGCAGGGGGCACAG
CTTATCCTCGCGAATGGTCTGAACCTGGAGCGATGGTTCGCCCGCTTTTATCAGCACCTTTCCGGCGTGCCGGAAGTCGT
CGTCTCCACCGGTGTCAAACCGATGGGCATTACCGAAGGCCCGTATAACGGTAAACCGAACCCGCACGCCTGGATGTCGG
CAGAAAACGCGCTGATTTATGTCGATAACATTCGCGACGCCCTGGTGAAGTACGATCCGGATAATGCGCAGATCTATAAG
CAAAACGCCGAACGCTATAAAGCGAAAATTCGCCAGATGGCCGATCCGTTGCGTGCCGAACTGGAAAAAATTCCCGCCGA
TCAGCGCTGGCTGGTCACCAGTGAAGGCGCGTTCTCTTACCTGGCGCGCGATAACGACATGAAAGAGCTTTATCTCTGGC
CAATTAACGCCGATCAACAGGGGACGCCAAAACAGGTGCGTAAAGTGATTGATACCATTAAAAAGCACCATATTCCCGCC
ATCTTTAGCGAGAGTACGGTTTCCGATAAACCGGCCCGTCAGGTCGCGCGTGAATCCGGCGCGCATTATGGCGGCGTACT
GTATGTCGATTCTCTGAGCGCCGCTGACGGCCCTGTGCCAACCTATCTGGATCTGCTGCGCGTCACGACCGAAACCATCG
TCAACGGCATTAACGACGGACTGAGGAGTCAACAATGA

Protein sequence : 
MTNLHRLKTLLIAGIVAILALSPAYAKEKFKVITTFTVIADMAKNVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQ
LILANGLNLERWFARFYQHLSGVPEVVVSTGVKPMGITEGPYNGKPNPHAWMSAENALIYVDNIRDALVKYDPDNAQIYK
QNAERYKAKIRQMADPLRAELEKIPADQRWLVTSEGAFSYLARDNDMKELYLWPINADQQGTPKQVRKVIDTIKKHHIPA
IFSESTVSDKPARQVARESGAHYGGVLYVDSLSAADGPVPTYLDLLRVTTETIVNGINDGLRSQQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 3e-135 100
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 3e-135 100
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 3e-135 100
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-135 100
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-135 99

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A3171 YP_002216833.1 periplasmic chelated iron-binding protein YfeA BAC0349 Protein 1e-135 100
SeD_A3171 YP_002216833.1 periplasmic chelated iron-binding protein YfeA BAC0439 Protein 8e-90 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeD_A3171 YP_002216833.1 periplasmic chelated iron-binding protein YfeA VFG0525 Protein 1e-135 100