|
Name : SeD_A3068 (SeD_A3068) Accession : YP_002216743.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Unknown Product : transposase B Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 2958878 - 2959501 bp Length : 624 bp Strand : - Note : identified by match to protein family HMM PF00665 DNA sequence : ATGTGGAATCACAAAAGGATCCACCGTATTTATTGTCTGCTGAAGCTGAATTTTCGCCGTAAGGGCAAACAACGGCTGCC GGTGCGTAACCCTTCGCCACTGGCCACGCCGGAAGCGTTGAACCAGAGCTGGTCTGTTGATTTTATGCATGATGCCCTGG TCTGTGGGCGTCGTTTTCGCACGTTCAATGTCGTTGATGACTTTAACCGTGAGGCGTTGTCGATTGAAATAGATCGGAAT CTGCCAGCCCCACGAGTGGTCCGGGTGCTTGACAGGATCGCGGCAAACCGTGGCTATCCGGCCATGCTTCGCATGGATAA CGGCCCAGAATTTATCTCTCTGGCACTGACTGAATGGGCAGAGAAACATGCCGTAAAACTGGTGTTTATCCAGCCGGGTA AGCCGACACAAAATGCTTTCATTGAGCGTTTTAACAGGACATATCGCACAGAAATACTCGATTTTTATCTGTTCAGAACG CTGAATGAAGTACGTGAAATCACGGAAAAATGGTTATCAGAATATAACTGTGAACGCCCGTATGAATCGCTGAACAATAT GACACCGGAGGAATACCGACAGCACCATTATTTGGCCGGGAACTCAAAAAATGTATGGAACTAA Protein sequence : MWNHKRIHRIYCLLKLNFRRKGKQRLPVRNPSPLATPEALNQSWSVDFMHDALVCGRRFRTFNVVDDFNREALSIEIDRN LPAPRVVRVLDRIAANRGYPAMLRMDNGPEFISLALTEWAEKHAVKLVFIQPGKPTQNAFIERFNRTYRTEILDFYLFRT LNEVREITEKWLSEYNCERPYESLNNMTPEEYRQHHYLAGNSKNVWN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| trp1400B | CAB46580.1 | IS1400 transposase B | Not tested | HPI | Protein | 1e-79 | 84 |
| unnamed | CAB46578.1 | IS1222-like transposase | Not tested | HPI | Protein | 6e-27 | 46 |
| unnamed | ABR13352.1 | insertion sequence IS407 OrfB | Not tested | PAGI-5 | Protein | 4e-34 | 45 |
| RS13 | AAP82958.1 | putative transposase | Not tested | PAPI-2 | Protein | 8e-24 | 44 |
