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Name : smpB (SeD_A3015) Accession : YP_002216696.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2905328 - 2905855 bp Length : 528 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGGGTGTTTTCGATATCAGATTACCTATGAATTCACGACACTTATGACGAAGAAAAAAGCACATAAACCGGGCTCAGC CACCATCGCGCTGAATAAGCGCGCCCGGCACGAATACTTTATCGAAGAAGAGTTCGAGGCTGGTCTCGCCCTGCAAGGCT GGGAAGTAAAATCTCTGCGCGCAGGAAAAGCCAATATCGGCGACAGTTACGTTATCCTCAAAGATGGCGAGGCCTGGCTG TTTGGCGCAAACTTTACGCCGATGGCGGTCGCCTCGACACATGTCGTATGCGACCCAACCCGAACCCGCAAACTGTTGTT AAATCAGCGTGAGCTTGATTCACTGTATGGCCGTATTAATCGTGAAGGTTATACTGTCGTCGCGCTTTCTCTGTACTGGA AAAATGCCTGGTGCAAAGTGAAGATCGGCGTGGCGAAAGGTAAAAAACAACATGATAAACGTTCCGATCTTAAAGAACGT GAGTGGCAACTGGATAAAGCACGCATTATGAAAAATGCAGGCCGATAA Protein sequence : MGCFRYQITYEFTTLMTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKDGEAWL FGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDLKER EWQLDKARIMKNAGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 6e-51 | 71 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 7e-25 | 47 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 7e-21 | 43 |
