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Name : SeD_A2935 (SeD_A2935) Accession : YP_002216626.1 Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Virulence Product : lysine decarboxylase, constitutive Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 2827491 - 2829635 bp Length : 2145 bp Strand : + Note : identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711 DNA sequence : ATGAACGTTATTGCTATCATGAACCACATGGGCGTCTACTTTAAAGAAGAGCCTATTCGTGAACTGCATCGTGCACTGGA AGGTTTAAATTTCCGTATCGTCTATCCAAACGACCGAGAAGACCTGCTGAAGCTGATTGAAAATAACTCCCGCCTTTGTG GCGTCATTTTCGACTGGGATAAATATAACCTTGAGCTTTGCGAAGAGATTAGCAAGCTGAACGAGTATATGCCGCTGTAC GCCTTCGCCAACAGCTACTCTACGCTGGACGTCAGCCTCAACGATCTGAGAATGCAGGTTCGCTTCTTTGAATATGCTTT AGGCGCCGCAGCCGATATCGCGGCGAAAATTCGCCAGAATACCGATGAATACATCGACAATATTCTACCGCCGCTGACAA AAGCGCTGTTCAAATATGTGCGCGAAGGGAAATATACTTTCTGTACGCCTGGCCACATGGGCGGGACCGCTTTCCAGAAA AGCCCCGTCGGCAGCATCTTTTATGATTTCTTCGGCCCGAACACGATGAAATCCGATATTTCGATTTCCGTTTCTGAACT GGGTTCGCTGCTGGACCACTCCGGCCCGCATAAAGAAGCGGAAGAGTATATCGCCCGCGTCTTTAACGCCGAACGTAGCT ACATGGTGACGAACGGCACCTCTACGGCGAACAAAATCGTCGGTATGTACTCCGCGCCGGCAGGCAGCACGGTACTGATT GACCGTAACTGCCATAAATCGCTGACCCATCTGATGATGATGAGCGACATTACGCCGATTTATTTCCGCCCAACCCGTAA CGCCTACGGTATTCTTGGCGGTATTCCGCAAAGCGAGTTCCAGCACGCCACTATCACTAAACGGGTAAAAGAGACGCCTA ACGCGACCTGGCCGGTCCATGCTGTTATTACTAACTCAACCTATGACGGTCTGTTGTATAACACTGACTACATCAAGAAA ACTCTGGATGTGAAGTCCATTCATTTTGACTCCGCCTGGGTGCCTTATACCAATTTCTCCCCTATTTATCAGGGTAAATG CGGTATGAGCGGCGACCGTGTAGAAGGCAAAATCATTTATGAAACCCAGTCCACGCATAAACTGCTGGCGGCGTTTTCAC AGGCATCCATGATTCATGTTAAAGGCGACATTAACGAAGAAACCTTTAACGAAGCCTACATGATGCATACCACCACTTCT CCGCACTACGGTATCGTAGCGTCTACTGAAACCGCAGCGGCGATGATGAAAGGTAATGCGGGTAAACGCCTGATTAACGG CTCTATTGAACGTGCGATTAAATTCCGTAAAGAAATTAAACGCCTGAAAAGCGAATCCGACGGCTGGTTCTTTGACGTAT GGCAGCCGGAACATATCGATGGAGCTGAGTGCTGGCCGCTGCGTTCAGATAGCGCATGGCATGGCTTCAAAAATATCGAT AACGAACACATGTACCTCGACCCGATCAAAGTCACTATCCTGACGCCGGGGATGAAGAAAGACGGTACGATGGATGAATT CGGTATTCCGGCAAGTCTGGTCGCCAAATATCTCGATGAACGCGGCATCATCGTAGAAAAAACCGGTCCATACAACCTGC TGTTCCTGTTCAGCATTGGTATCGACAAAACCAAAGCTCTGAGCCTGCTGCGCGCGCTCACTGAATTTAAACGCGCCTTT GACCTGAACCTGCGCGTCAAAAACATTCTGCCGGCACTGTACCGCGAAGCGCCTGAGTTTTATGAAAATATGCGCATCCA GGAACTGGCGCAGAATATTCATAAACTGGTCGAACATCATAATCTGCCGGACTTAATGTACCGTGCGTTTGAAGTGCTGC CGAAAATGGTGATGACGCCGTATACTGCGTTCCAGAAAGAGCTGCATGGCGAAACGGAAGAGGTGTATCTTGAAGAGATG GTTGGACGCGTCAACGCCAACATGATCCTTCCTTACCCTCCGGGAGTGCCGCTGGTGATGCCTGGTGAAATGATCACCGA GGAAAGCCGTCCGGTACTGGAATTCCTGCAAATGCTGTGCGAAATCGGCGCCCACTATCCGGGCTTCGAAACCGATATCC ACGGCGCCTATCGTCAGGCAGACGGACGTTACACCGTTAAAGTGCTGAAAGAAAATACGAAATAA Protein sequence : MNVIAIMNHMGVYFKEEPIRELHRALEGLNFRIVYPNDREDLLKLIENNSRLCGVIFDWDKYNLELCEEISKLNEYMPLY AFANSYSTLDVSLNDLRMQVRFFEYALGAAADIAAKIRQNTDEYIDNILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK SPVGSIFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEEYIARVFNAERSYMVTNGTSTANKIVGMYSAPAGSTVLI DRNCHKSLTHLMMMSDITPIYFRPTRNAYGILGGIPQSEFQHATITKRVKETPNATWPVHAVITNSTYDGLLYNTDYIKK TLDVKSIHFDSAWVPYTNFSPIYQGKCGMSGDRVEGKIIYETQSTHKLLAAFSQASMIHVKGDINEETFNEAYMMHTTTS PHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLKSESDGWFFDVWQPEHIDGAECWPLRSDSAWHGFKNID NEHMYLDPIKVTILTPGMKKDGTMDEFGIPASLVAKYLDERGIIVEKTGPYNLLFLFSIGIDKTKALSLLRALTEFKRAF DLNLRVKNILPALYREAPEFYENMRIQELAQNIHKLVEHHNLPDLMYRAFEVLPKMVMTPYTAFQKELHGETEEVYLEEM VGRVNANMILPYPPGVPLVMPGEMITEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLKENTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 93 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 68 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeD_A2935 | YP_002216626.1 | lysine decarboxylase, constitutive | VFG1670 | Protein | 0.0 | 68 |
