Gene Information

Name : SeD_A2509 (SeD_A2509)
Accession : YP_002216247.1
Strain : Salmonella enterica CT_02021853
Genome accession: NC_011205
Putative virulence/resistance : Unknown
Product : glycine betaine/carnitine/choline transport ATP-binding protein opuCA
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1125
EC number : -
Position : 2388506 - 2389453 bp
Length : 948 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence :
ATGATTGAATTTAACCATGTCAGTAAAACCTTCGGCGATCAACAGGCTGTTAGCGACCTCAATTTGCACTTTAGCGAAGG
CAGCTTTTCGGTGTTAATTGGCACCTCCGGTTCGGGAAAATCGACCACTCTGAAGATGATTAACCGGCTGGTAGAGCATG
ATAGCGGAACGATCCGTTTTGCCGGGGAAGAGATCCGCAGCCTGCCGGTGCTTGAACTGCGCCGTCGCATGGGCTATGCC
ATTCAGTCTATCGGCCTTTTTCCCCACTGGACGGTGGCGCAAAATATCGCCACCGTACCGCAACTACAAAAGTGGTCGCG
TGCGCGGATTAACGATCGTATTGATGAACTGATGGCATTATTGGGTCTGGAAAGCGCGCTGCGCGATCGCTATCCGCATC
AGCTTTCCGGCGGGCAACAGCAGCGGGTCGGCGTTGCGCGGGCGCTGGCTGCCGATCCGCAGGTATTGCTGATGGACGAG
CCTTTCGGCGCGCTTGATCCGGTAACGCGCGGCGCATTGCAGCAGGAGATGACCCGCATTCATCAGCTACTGGGGCGCAC
CATCGTACTGGTGACGCACGACATCGACGAGGCGCTACGCCTCGCCGACCATCTGGTGCTGATGGACGGGGGCCACGTTA
TCCAACAGGGATCGCCACTTTCTATGCTGACCTCGCCGGAAAATGATTTCGTGCAGGCATTTTTTGGCCGCAGCGAGCTG
GGCGTAAGGCTGCTTTCGTTACGTAGCGTAGGCGATTATGTACGTCGGCATGAACAGCTCAGCGGCGACGCGCTGGTGGA
AGAGATGACGCTACGCGATGCGCTATCGATGTTTGTCGCCCGTCGGTGCGACGTCCTGCCGGTGGCGAATCAGCAGGGCG
AGCCCTGCGGTACGCTCCATTTCCGCGATCTGCTTTCGGAGACGTCCCCCCGTGAAACGACTGTGTGA

Protein sequence :
MIEFNHVSKTFGDQQAVSDLNLHFSEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGTIRFAGEEIRSLPVLELRRRMGYA
IQSIGLFPHWTVAQNIATVPQLQKWSRARINDRIDELMALLGLESALRDRYPHQLSGGQQQRVGVARALAADPQVLLMDE
PFGALDPVTRGALQQEMTRIHQLLGRTIVLVTHDIDEALRLADHLVLMDGGHVIQQGSPLSMLTSPENDFVQAFFGRSEL
GVRLLSLRSVGDYVRRHEQLSGDALVEEMTLRDALSMFVARRCDVLPVANQQGEPCGTLHFRDLLSETSPRETTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 2e-56 51
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 1e-56 51